Basic Information
Locus ID:
evm.TU.LG13.701
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 7753305 | 7770665 | - | evm.TU.LG13.701 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 143,024.45 Da | 47.66 | 75.90 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 309 | 437 | 1.54938E-19 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1125 | 1168 | 9.96609E-17 | - |
| CDD | cd12108 | Hr-like | 48 | 174 | 3.87376E-31 | - |
| CDD | cd12108 | Hr-like | 658 | 814 | 3.07215E-29 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 50 | 176 | 1.1E-11 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 654 | 751 | 1.3E-6 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1125 | 1167 | 1.4E-6 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 1173 | 1220 | 4.5E-15 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 997 | 1072 | 8.7E-18 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1125 | 1171 | 2.24E-7 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 988 | 1053 | 9.15E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1063 | 1118 | 3.4E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 44 | 194 | 1.2E-34 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 309 | 455 | 6.0E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1121 | 1170 | 6.2E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1197 | 1223 | 1.3E-7 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 650 | 892 | 7.3E-26 | - |
| SMART | SM00184 | ring_2 | 1126 | 1167 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 990 | 1059 | 26.055811 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1062 | 1125 | 29.04855 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1126 | 1168 | 11.176261 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010681649.2 | zinc finger protein BRUTUS isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YHY9 | Zinc finger protein BRUTUS OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology