Basic Information
Locus ID:
evm.TU.LG13.671
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 7326159 | 7327443 | + | evm.TU.LG13.671 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 45,560.86 Da | 43.15 | 81.34 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 282 | 3.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 346 | 379 | 0.15 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 24 | 91 | 3.6E-16 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 203 | 238 | 0.0023 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 106 | 380 | 1.83E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 393 | 5.9E-107 | IPR015943 |
| SMART | SM00320 | WD40_4 | 149 | 189 | 7.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 380 | 0.025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 326 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 238 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 242 | 282 | 8.1E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 205 | 247 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 205 | 241 | 8.729241 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 156 | 192 | 9.467419 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 249 | 284 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 156 | 192 | 11.310488 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 176 | 190 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 367 | 381 | 2.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 176 | 190 | 2.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 269 | 283 | 2.0E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35050.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_010690365.1 | WD-40 repeat-containing protein MSI2 [Beta vulgaris subsp. vulgaris] | 0 |
| O22469 | WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana OX=3702 GN=MSI3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A834GXN3 | CAF1C_H4-bd domain-containing protein OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim05G0057000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG13.663, evm.TU.LG13.669, evm.TU.LG13.671 ... |