Basic Information
Locus ID:
evm.TU.LG13.669
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 7317928 | 7319224 | + | evm.TU.LG13.669 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 45,905.19 Da | 38.16 | 79.32 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 349 | 383 | 0.0064 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 208 | 243 | 0.024 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 24 | 91 | 5.1E-16 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 249 | 287 | 0.0044 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 105 | 384 | 7.16E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 396 | 1.6E-103 | IPR015943 |
| SMART | SM00320 | WD40_4 | 344 | 384 | 0.0064 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 330 | 5.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 287 | 3.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 154 | 194 | 8.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 243 | 7.8E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 210 | 252 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 351 | 385 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 203 | 10.307941 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 181 | 195 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 181 | 195 | 6.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 274 | 288 | 6.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 371 | 385 | 6.7E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_010690365.1 | WD-40 repeat-containing protein MSI2 [Beta vulgaris subsp. vulgaris] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8XIK6 | Uncharacterized protein OS=Salvia splendens OX=180675 GN=SASPL_126241 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG13.663, evm.TU.LG13.669, evm.TU.LG13.671 ... |