Basic Information
Locus ID:
evm.TU.LG13.663
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 7215892 | 7216777 | - | evm.TU.LG13.663 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 29,910.93 Da | 33.46 | 73.97 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 165 | 203 | 0.004 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 125 | 159 | 0.033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 23 | 249 | 2.75E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 260 | 7.3E-71 | IPR015943 |
| SMART | SM00320 | WD40_4 | 163 | 203 | 3.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 207 | 247 | 0.77 | IPR001680 |
| SMART | SM00320 | WD40_4 | 65 | 110 | 0.004 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 159 | 0.048 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 126 | 168 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 77 | 119 | 9.572741 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 97 | 111 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_010690365.1 | WD-40 repeat-containing protein MSI2 [Beta vulgaris subsp. vulgaris] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A4L0B6 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_19503 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG13.663, evm.TU.LG13.669, evm.TU.LG13.671 ... |