Basic Information
Locus ID:
evm.TU.LG13.657
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 7106676 | 7126757 | - | evm.TU.LG13.657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.29 | 60,389.21 Da | 57.35 | 74.60 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 178 | 251 | 2.98757E-31 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 327 | 376 | 3.32912E-29 | - |
| Pfam | PF00627 | UBA/TS-N domain | 336 | 371 | 1.4E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 442 | 497 | 1.7E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 523 | 558 | 6.8E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 180 | 253 | 2.4E-19 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 178 | 256 | 1.66E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 504 | 565 | 9.97E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 440 | 505 | 2.75E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 330 | 381 | 1.13E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 432 | 498 | 2.0E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 326 | 376 | 1.1E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 515 | 562 | 1.2E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 174 | 257 | 1.9E-28 | - |
| SMART | SM00727 | CBM | 440 | 483 | 6.5E-7 | IPR006636 |
| SMART | SM00213 | ubq_7 | 178 | 252 | 3.7E-22 | IPR000626 |
| SMART | SM00165 | uba_6 | 523 | 560 | 1.7E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 333 | 373 | 0.0011 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 178 | 566 | 5.8E-120 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 520 | 561 | 14.546953 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 331 | 374 | 12.33002 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 178 | 256 | 19.891037 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 468 | 490 | 3.0E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 534 | 548 | 3.0E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 517 | 533 | 3.0E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 549 | 564 | 3.0E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 86 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_052199592.1 | ubiquitin receptor RAD23c-like isoform X1 [Diospyros lotus] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9CX93 | Ubiquitin receptor RAD23 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology