Basic Information
Locus ID:
evm.TU.LG13.60
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 524590 | 526161 | + | evm.TU.LG13.60 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 48,036.00 Da | 48.95 | 66.76 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 374 | 413 | 9.2E-8 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 103 | 157 | 1.03E-5 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 171 | 293 | 1.83E-13 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 367 | 419 | 2.79E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 359 | 418 | 7.4E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 153 | 303 | 1.2E-18 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 371 | 413 | 11.006363 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_010682773.1 | F-box protein At1g67340 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9EBE3 | MYND-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology