Basic Information
Locus ID:
evm.TU.LG13.461
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
NDR1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 4615191 | 4618232 | + | evm.TU.LG13.461 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 50,948.12 Da | 45.56 | 84.89 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 198 | 233 | 1.4E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 190 | 268 | 8.37E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 177 | 232 | 1.9E-9 | - |
| SMART | SM00256 | fbox_2 | 196 | 236 | 1.2E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 302 | 440 | 2.1E-10 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20590.1 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family. | 0 |
| RefSeq | XP_048497855.1 | protein NDR1-like [Beta vulgaris subsp. vulgaris] | 0 |
| Q9ZPS1 | Putative F-box protein At2g02030 OS=Arabidopsis thaliana OX=3702 GN=At2g02030 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0K9QQW4 | LEA_2 domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_151440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG13.461, evm.TU.LG13.463, evm.TU.LG13.464 ... |