HalophFGD

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Basic Information
Locus ID: evm.TU.LG13.331
Species & Taxonomic ID: Portulaca oleracea & 46147
Genome Assembly: GWHCBIU00000000
Description: F-box family
Maps and Mapping Data
Chromosome Start End Strand ID
chr13 3083881 3085151 + evm.TU.LG13.331
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.29 42,452.09 Da 44.73 88.42 -0.09
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 2 42 4.6E-4 IPR001810
SUPERFAMILY SSF81383 F-box domain 2 72 8.24E-10 IPR036047
SMART SM00256 fbox_2 3 43 7.1E-5 IPR001810
ProSiteProfiles PS50181 F-box domain profile. 1 43 9.68293 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G40910.2 F-box and associated interaction domains-containing protein. 0
RefSeq XP_049369032.1 F-box only protein 8-like [Solanum verrucosum] 0
Swiss-Prot Q3EBI7 F-box protein At2g40910 OS=Arabidopsis thaliana OX=3702 GN=At2g40910 PE=2 SV=1 0
TrEMBL A0A7C9AYU5 F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Thinopyrum elongatum 1 Tel1E01G723400
Portulacaceae Portulaca oleracea 23 evm.TU.LG03.1144, evm.TU.LG03.179, evm.TU.LG03.180 ...
evm.TU.LG03.181, evm.TU.LG03.182, evm.TU.LG03.183, evm.TU.LG03.184, evm.TU.LG03.1951, evm.TU.LG03.200, evm.TU.LG04.1459, evm.TU.LG05.1983, evm.TU.LG12.1521, evm.TU.LG12.1534, evm.TU.LG12.1536, evm.TU.LG13.323, evm.TU.LG13.324, evm.TU.LG13.331, evm.TU.LG21.28, evm.TU.LG21.29, evm.TU.LG21.30, evm.TU.LG21.37, evm.TU.LG24.753, evm.TU.LG26.201
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.