Basic Information
Locus ID:
evm.TU.LG13.247
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase RF298
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 2108008 | 2111069 | - | evm.TU.LG13.247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 52,464.13 Da | 54.61 | 72.24 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 409 | 456 | 2.7E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 411 | 457 | 1.84E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 402 | 462 | 2.0E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 412 | 452 | 9.759973 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 397 | - | - |
| Coils | Coil | Coil | 208 | 235 | - | - |
| Coils | Coil | Coil | 152 | 189 | - | - |
| Coils | Coil | Coil | 257 | 369 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03000.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021854826.1 | putative E3 ubiquitin-protein ligase RF298 isoform X1 [Spinacia oleracea] | 0 |
| Q0WPJ7 | Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana OX=3702 GN=RF298 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QJ10 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_173750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg16107, jg27952, jg37895, jg37896, jg37897 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4790 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022473 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g065240 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59107, Sbi_jg63529 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23366 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012821 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02499, Sgl07653 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012850, gene:ENSEOMG00000030192 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0024970, CQ.Regalona.r1.3BG0025900 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30011430, pistato.v30238100 |
| Apiaceae | Apium graveolens | 2 | Ag8G01668, AgUnG00547 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G002920, COCNU_01G002930, COCNU_01G002940 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698200, gene-LOC103716183 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1987.V1.1, AsparagusV1_05.3139.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri2G01915, Ftri3G06927 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G03365.1, AT4G03000.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006805m.g.v1.0, Thhalv10028432m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02370.v2.2, Sp6g03040.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB03g039410.2N, BniB05g039040.2N, BniB06g018380.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G2154, Ceq09G1257 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G2265, Cgl09G1343 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g05090 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g01950, gene.Thate06g16000 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12127, nbisL1-mrna-5058, nbisL1-mrna-6294 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.229, evm.TU.LG11.1405 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008151, Pov_00022465 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G35606 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2908, BH03.3044, CH03.3234 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0405480, gene-QOZ80_5BG0453610 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0019060.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_009524 |
| Poaceae | Oryza coarctata | 2 | Oco09G001950, Oco10G002010 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g04950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G268700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0605112 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G012680, Chr12G024060, Chr12G024080, Chr18G001360 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G165300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG011980, gene_TRIDC1BG014770 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G084200.1, TraesCS1B02G101700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb104480_P001, Zm00001eb320610_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50116 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26400 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.992, evm.TU.LG13.247, evm.TU.LG13.248 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g11010 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_3_RagTag.511, evm.TU.Scaffold_3_RagTag.513 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11408, nbisL1-mrna-1451, nbisL1-mrna-21341 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-19921, nbisL1-mrna-7058, nbisL1-mrna-7715 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11552, nbisL1-mrna-18425, nbisL1-mrna-6234 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.271, evm.TU.utg000019l.909 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00012799, Maker00013494 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10022, nbisL1-mrna-17321 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2061, nbisL1-mrna-7553 |
| Salicaceae | Populus euphratica | 5 | populus_peu07827, populus_peu28401, populus_peu28402 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132605605, gene-LOC132609731, gene-LOC132642049 ... |
| Solanaceae | Solanum chilense | 6 | SOLCI001974100, SOLCI004574100, SOLCI005629200 ... |
| Solanaceae | Solanum pennellii | 7 | gene-LOC107007909, gene-LOC107022020, gene-LOC107030819 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4632_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1511 |
| Zosteraceae | Zostera marina | 2 | Zosma02g25600.v3.1, Zosma03g20280.v3.1 |