Basic Information
Locus ID:
evm.TU.LG13.1532
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Short Name:
UBC27
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 34746310 | 34747504 | - | evm.TU.LG13.1532 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 21,177.64 Da | 46.80 | 104.21 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 54 | 131 | 6.18487E-38 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 54 | 131 | 2.3E-30 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 52 | 131 | 2.01E-34 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 42 | 138 | 1.3E-35 | IPR016135 |
| SMART | SM00212 | ubc_7 | 10 | 158 | 2.1E-28 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 17 | 190 | 27.986115 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 93 | 109 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50870.1 | ubiquitin-conjugating enzyme 27. | 0 |
| RefSeq | XP_021775793.1 | ubiquitin-conjugating enzyme E2 27-like [Chenopodium quinoa] | 0 |
| Q9FI61 | Ubiquitin-conjugating enzyme E2 27 OS=Arabidopsis thaliana OX=3702 GN=UBC27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A063 | UBC core domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for evm.TU.LG13.1532.