Basic Information
Locus ID:
evm.TU.LG12.999
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 21264043 | 21272432 | - | evm.TU.LG12.999 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 157,780.95 Da | 49.31 | 76.84 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1249 | 1377 | 8.87267E-54 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 659 | 990 | 1.14211E-84 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1264 | 1366 | 1.0E-16 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 680 | 1068 | 3.8E-69 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 1106 | 1142 | 2.9E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1103 | 1154 | 5.65E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 999 | 1423 | 4.25E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 642 | 990 | 1.06E-43 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1194 | 1424 | 3.7E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 743 | 842 | 5.2E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1099 | 1157 | 1.3E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 633 | 719 | 1.7E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 883 | 1004 | 5.1E-29 | IPR038718 |
| SMART | SM00487 | ultradead3 | 655 | 969 | 3.5E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1283 | 1366 | 2.9E-17 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 674 | 952 | 11.250996 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1260 | 1419 | 14.706564 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1106 | 1145 | 10.704165 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1121 | 1130 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 624 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_044461540.1 | helicase-like transcription factor CHR28 isoform X1 [Mangifera indica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067G8C9 | Helicase-like transcription factor CHR28 OS=Citrus sinensis OX=2711 GN=CISIN_1g000537mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology