Basic Information
Locus ID:
evm.TU.LG12.983
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 21055195 | 21062705 | - | evm.TU.LG12.983 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 107,783.89 Da | 59.91 | 76.48 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 248 | 364 | 5.90052E-20 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 254 | 362 | 1.8E-6 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 135 | 389 | 2.88E-18 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 709 | 773 | 2.98E-9 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 840 | 916 | 5.13E-14 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 132 | 401 | 3.4E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 837 | 916 | 1.2E-10 | - |
| SMART | SM00577 | forpap2 | 197 | 373 | 8.6E-18 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 709 | 773 | 2.4E-4 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 843 | 911 | 8.7E-8 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 842 | 912 | 13.397682 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 708 | 774 | 11.115709 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 138 | 386 | 15.503305 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 961 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 686 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 794 | 827 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 553 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 794 | 837 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 670 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_031250793.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X2 [Pistacia vera] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067GKB1 | protein-serine/threonine phosphatase OS=Citrus sinensis OX=2711 GN=CISIN_1g002166mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology