Basic Information
Locus ID:
evm.TU.LG12.963
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 20888766 | 20892035 | + | evm.TU.LG12.963 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 32,517.92 Da | 49.10 | 76.95 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 85 | 135 | 5.59235E-28 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 87 | 133 | 1.2E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 83 | 146 | 4.99E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 147 | 9.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 87 | 133 | 2.3E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 87 | 134 | 12.666314 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 102 | 111 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_015889149.1 | E3 ubiquitin-protein ligase RMA1H1-like isoform X1 [Ziziphus jujuba var. spinosa] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P4A5B4 | RING-type E3 ubiquitin transferase OS=Ziziphus jujuba OX=326968 GN=LOC107423986 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology