Basic Information
Locus ID:
evm.TU.LG12.961
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Protein of unknown function (DUF295)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 20878179 | 20879902 | + | evm.TU.LG12.961 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 46,406.54 Da | 52.34 | 85.40 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03478 | Protein of unknown function (DUF295) | 286 | 334 | 3.5E-5 | IPR005174 |
| Pfam | PF00646 | F-box domain | 7 | 45 | 4.5E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 43 | 5.49E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 46 | 4.3E-9 | - |
| SMART | SM00256 | fbox_2 | 11 | 51 | 4.1E-9 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 46 | 9.815402 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024163718.1 | uncharacterized protein LOC112170604 [Rosa chinensis] | 0 |
| TrEMBL | A0A5N6QPU6 | F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_005319 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 4 | Ag11G04177, Ag4G02090, Ag8G00526, Ag9G00673 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.961 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014702 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g13350 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13710 |