Basic Information
Locus ID:
evm.TU.LG12.960
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
response to stimulus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 20873401 | 20875373 | + | evm.TU.LG12.960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 15,509.44 Da | 69.89 | 60.78 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06943 | LSD1 zinc finger | 90 | 114 | 2.9E-11 | IPR005735 |
| Pfam | PF06943 | LSD1 zinc finger | 52 | 76 | 7.9E-10 | IPR005735 |
| TIGRFAM | TIGR01053 | LSD1: zinc finger domain, LSD1 subclass | 88 | 115 | 1.4E-8 | IPR005735 |
| TIGRFAM | TIGR01053 | LSD1: zinc finger domain, LSD1 subclass | 49 | 79 | 3.3E-16 | IPR005735 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21610.1 | lsd one like 2. Contains the same novel zinc finger motif with LSD1, a negative regulator of cell death and defense response. Due to differential splicing, it encodes two different proteins, one of which contains an additional, putative DNA binding motif. Northern analysis demonstrated that LOL2 transcripts containing the additional DNA binding motif are predominantly upregulated after treatment with both virulent and avirulent Pseudomonas syringae pv maculicola strains. | 0 |
| RefSeq | XP_006449334.1 | protein LOL2 [Citrus clementina] | 0 |
| O65426 | Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1 | 0 | |
| TrEMBL | V4W8M3 | Protein LOL2 OS=Citrus clementina OX=85681 GN=CICLE_v10017149mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24879 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22243 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018025 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g183230 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg26103, Sbi_jg51831, Sbi_jg9944 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18783 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017034 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45921, Sgl50621 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000011905, gene:ENSEOMG00000032799 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0005240, CQ.Regalona.r1.8BG0005350 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30088690 |
| Apiaceae | Apium graveolens | 1 | Ag8G00921 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G002500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696358 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2019.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G14234 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G21610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026412m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g19740.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2293 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2597 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g13580 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g18780 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.960 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005619 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23726, Lb4G24771 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0024290, gene-QOZ80_1BG0074980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0271290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053759 |
| Poaceae | Oryza coarctata | 2 | Oco01G014430, Oco02G014710 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G193500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603313 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G015570, Chr05G018250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G376800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG032870, gene_TRIDC3BG037360 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G219500.1.cds1, TraesCS3B02G250000.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb161950_P005 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29262 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8206 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g11280 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.850 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14120 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21585 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.124 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006277 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10632 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21918 |
| Salicaceae | Populus euphratica | 1 | populus_peu10068 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621203 |
| Solanaceae | Solanum chilense | 1 | SOLCI005462700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008945 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16702 |
| Zosteraceae | Zostera marina | 2 | Zosma01g23600.v3.1, Zosma01g30140.v3.1 |