Basic Information
Locus ID:
evm.TU.LG12.921
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 30803182 | 30811467 | - | evm.TU.LG12.921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 50,502.26 Da | 51.27 | 72.34 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 351 | 0.0077 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 98 | 357 | 1.25E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 111 | 439 | 2.7E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 268 | 308 | 0.045 | IPR001680 |
| SMART | SM00320 | WD40_4 | 83 | 134 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 311 | 352 | 0.034 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 77 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_010684410.1 | autophagy-related protein 18a [Beta vulgaris subsp. vulgaris] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YQG3 | Autophagy-related protein 18a-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology