Basic Information
Locus ID:
evm.TU.LG12.695
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 17874197 | 17875125 | + | evm.TU.LG12.695 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 30,622.02 Da | 41.56 | 82.08 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 20 | 57 | 3.6E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 20 | 73 | 9.03E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 57 | 3.9E-6 | - |
| SMART | SM00256 | fbox_2 | 21 | 61 | 1.8E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 61 | 8.702637 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_050369041.1 | LOW QUALITY PROTEIN: putative F-box protein At1g32420 [Potentilla anserina] | 0 |
| Q9C6J3 | Putative F-box protein At1g50870 OS=Arabidopsis thaliana OX=3702 GN=At1g50870 PE=4 SV=1 | 0 | |
| TrEMBL | A0A5B7BHY0 | F-box domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_037267 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 7 | evm.TU.LG08.537, evm.TU.LG11.863, evm.TU.LG12.619 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu26090 |