Basic Information
Locus ID:
evm.TU.LG12.693
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 17856163 | 17860615 | + | evm.TU.LG12.693 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 83,928.98 Da | 46.55 | 89.10 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 20 | 57 | 2.9E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 362 | 399 | 1.7E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 21 | 69 | 2.88E-10 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 362 | 411 | 5.63E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 57 | 1.9E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 352 | 399 | 2.1E-5 | - |
| SMART | SM00256 | fbox_2 | 21 | 61 | 6.2E-4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 363 | 403 | 6.2E-4 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 712 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_040361669.1 | putative F-box protein At3g52320 [Rosa chinensis] | 0 |
| Q9FZF8 | Putative F-box protein At1g47790 OS=Arabidopsis thaliana OX=3702 GN=At1g47790 PE=4 SV=1 | 0 | |
| TrEMBL | A0A5N5IE42 | F-box protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_028051 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 7 | evm.TU.LG08.537, evm.TU.LG11.863, evm.TU.LG12.619 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu26090 |