HalophFGD

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Basic Information
Locus ID: evm.TU.LG12.462
Species & Taxonomic ID: Nitraria sibirica & 357931
Genome Assembly:
Description: Glutathione S-transferase, N-terminal domain
Maps and Mapping Data
Chromosome Start End Strand ID
LG12 14549002 14549807 - evm.TU.LG12.462
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.85 19,676.50 Da 38.51 87.27 -0.50
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd17058 Ubl_SNRNP25 59 144 1.63384E-39 IPR040610
Pfam PF18036 Ubiquitin-like domain 60 147 4.7E-32 IPR040610
SUPERFAMILY SSF54236 Ubiquitin-like 55 151 1.19E-25 IPR029071
Gene3D G3DSA:3.10.20.90 - 54 155 4.0E-39 -
ProSiteProfiles PS50053 Ubiquitin domain profile. 60 145 8.502503 IPR000626
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K00799 (glutathione S-transferase [EC:2.5.1.18])
Pathway:
ko00480 (Glutathione metabolism) map00480 (Glutathione metabolism) ko00980 (Metabolism of xenobiotics by cytochrome P450) map00980 (Metabolism of xenobiotics by cytochrome P450) ko00982 (Drug metabolism - cytochrome P450) map00982 (Drug metabolism - cytochrome P450) ko00983 (Drug metabolism - other enzymes) map00983 (Drug metabolism - other enzymes) ko01524 (Platinum drug resistance) map01524 (Platinum drug resistance)
Reaction:
R03522 (RX + Glutathione <=> Halide + R-S-Glutathione) R07002 ((1R,2S)-Naphthalene 1,2-oxide + Glutathione <=> (1R)-Hydroxy-(2R)-glutathionyl-1,2-dihydronaphthalene) R07003 ((1S,2R)-Naphthalene 1,2-oxide + Glutathione <=> (1R)-Glutathionyl-(2R)-hydroxy-1,2-dihydronaphthalene) R07004 ((1S,2R)-Naphthalene 1,2-oxide + Glutathione <=> (1S)-Hydroxy-(2S)-glutathionyl-1,2-dihydronaphthalene) R07023 (1-Nitronaphthalene-7,8-oxide + Glutathione <=> 1-Nitro-7-hydroxy-8-glutathionyl-7,8-dihydronaphthalene) R07024 (1-Nitronaphthalene-7,8-oxide + Glutathione <=> 1-Nitro-7-glutathionyl-8-hydroxy-7,8-dihydronaphthalene) R07025 (1-Nitronaphthalene-5,6-oxide + Glutathione <=> 1-Nitro-5-hydroxy-6-glutathionyl-5,6-dihydronaphthalene) R07026 (1-Nitronaphthalene-5,6-oxide + Glutathione <=> 1-Nitro-5-glutathionyl-6-hydroxy-5,6-dihydronaphthalene) R07069 (Bromobenzene-3,4-oxide + Glutathione <=> 3,4-Dihydro-3-hydroxy-4-S-glutathionyl bromobenzene) R07070 (Bromobenzene-2,3-oxide + Glutathione <=> 2,3-Dihydro-2-S-glutathionyl-3-hydroxy bromobenzene) R07083 (Benzo[a]pyrene-4,5-oxide + Glutathione <=> 4,5-Dihydro-4-hydroxy-5-S-glutathionyl-benzo[a]pyrene) R07084 (Benzo[a]pyrene-7,8-dihydrodiol + Glutathione <=> 7,8-Dihydro-7-hydroxy-8-S-glutathionyl-benzo[a]pyrene + H2O) R07091 (2,2-Dichloroacetaldehyde + Glutathione <=> S-(2,2-Dichloro-1-hydroxy)ethyl glutathione) R07092 (1,1-Dichloroethylene epoxide + Glutathione <=> 2-(S-Glutathionyl)acetyl chloride + Hydrochloric acid) R07093 (Chloroacetyl chloride + Glutathione <=> S-(2-Chloroacetyl)glutathione + Hydrochloric acid) R07094 (2-(S-Glutathionyl)acetyl chloride + Glutathione <=> 2-(S-Glutathionyl)acetyl glutathione + Hydrochloric acid) R07100 (Trichloroethene + Glutathione <=> S-(1,2-Dichlorovinyl)glutathione + Hydrochloric acid) R07113 (1,2-Dibromoethane + Glutathione + H+ <=> Glutathione episulfonium ion + 2 Hydrobromic acid) R07116 (2-Bromoacetaldehyde + Glutathione <=> S-(Formylmethyl)glutathione + Hydrobromic acid) R08280 (Aldophosphamide + Glutathione <=> 4-Glutathionyl cyclophosphamide + H2O) R09409 (Aflatoxin B1-exo-8,9-epoxide + Glutathione <=> Aflatoxin B1exo-8,9-epoxide-GSH) R11905 (Hepatotoxins + Glutathione <=> R-S-Glutathione)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G07860.1 Ubiquitin-like superfamily protein. 0
RefSeq XP_031260832.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Pistacia vera] 0
Swiss-Prot Q84WS8 U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1 0
TrEMBL A0A6P6B4M7 U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Durio zibethinus OX=66656 GN=LOC111314770 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 1 jg17173
Aizoaceae Mesembryanthemum crystallinum 1 gene_8394
Amaranthaceae Atriplex hortensis 1 Ah036054
Amaranthaceae Salicornia bigelovii 2 Sbi_jg39955, Sbi_jg55286
Amaranthaceae Salicornia europaea 1 Seu_jg14378
Amaranthaceae Suaeda aralocaspica 1 GOSA_00014140
Amaranthaceae Suaeda glauca 3 Sgl12103, Sgl12119, Sgl17397
Amaranthaceae Chenopodium album 2 gene:ENSEOMG00000017349, gene:ENSEOMG00000049485
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.1AG0022170, CQ.Regalona.r1.1BG0002180 ...
CQ.Regalona.r1.9BG0014890
Anacardiaceae Pistacia vera 1 pistato.v30048830
Apiaceae Apium graveolens 1 Ag2G00012
Arecaceae Cocos nucifera 1 COCNU_10G001760
Arecaceae Phoenix dactylifera 1 gene-LOC103714628
Asparagaceae Asparagus officinalis 1 AsparagusV1_04.2119.V1.1
Asteraceae Flaveria trinervia 1 Ftri9G20326
Brassicaceae Arabidopsis thaliana 1 AT3G07860.1
Brassicaceae Eutrema salsugineum 1 Thhalv10021648m.g.v1.0
Brassicaceae Schrenkiella parvula 1 Sp3g06780.v2.2
Brassicaceae Brassica nigra 2 BniB01g042910.2N, BniB03g023780.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq08G0519
Casuarinaceae Casuarina glauca 1 Cgl08G0476
Cymodoceaceae Cymodocea nodosa 1 gene.Cymno10g09400
Hydrocharitaceae Thalassia testudinum 1 gene.Thate09g06710
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-5305
Nitrariaceae Nitraria sibirica 2 evm.TU.LG06.143, evm.TU.LG12.462
Plantaginaceae Plantago ovata 1 Pov_00020600
Plumbaginaceae Limonium bicolor 2 Lb3G17489, Lb8G35827
Poaceae Echinochloa crus-galli 3 AH09.2617, BH09.2839, CH09.3038
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_4AG0300570, gene-QOZ80_4BG0331240
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.2HG0201100.1
Poaceae Oryza coarctata 2 Oco07G018390, Oco08G017720
Poaceae Oryza sativa 1 LOC_Os04g56770.1
Poaceae Paspalum vaginatum 1 gene-BS78_06G271300
Poaceae Puccinellia tenuiflora 2 Pt_Chr0300426, Pt_Chr0300454
Poaceae Sporobolus alterniflorus 4 Chr23G001700, Chr25G001310, Chr26G017610, Chr30G001330
Poaceae Thinopyrum elongatum 1 Tel2E01G834600
Poaceae Triticum dicoccoides 5 gene_TRIDC2AG041410, gene_TRIDC2AG062640 ...
gene_TRIDC2AG069480, gene_TRIDC2BG034290, gene_TRIDC2BG075070
Poaceae Triticum aestivum 8 TraesCS2A02G285800.1, TraesCS2A02G435600.1 ...
TraesCS2A02G492000.1, TraesCS2B02G251600.1, TraesCS2B02G520100.1, TraesCS2B02G586100.1, TraesCS2D02G492200.1, TraesCS6B02G113500.1
Poaceae Zea mays 1 Zm00001eb067320_P001
Poaceae Zoysia japonica 1 nbis-gene-23117
Poaceae Zoysia macrostachya 1 Zma_g20625
Portulacaceae Portulaca oleracea 2 evm.TU.LG03.554, evm.TU.LG12.1170
Posidoniaceae Posidonia oceanica 1 gene.Posoc06g09220
Rhizophoraceae Bruguiera sexangula 1 evm.TU.Scaffold_8_RagTag.1416
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-9235
Rhizophoraceae Ceriops tagal 1 nbisL1-mrna-17618
Rhizophoraceae Ceriops zippeliana 1 nbisL1-mrna-15246
Rhizophoraceae Kandelia obovata 1 Maker00003751
Rhizophoraceae Rhizophora apiculata 1 nbisL1-mrna-9515
Rhizophoraceae Rhizophora mangle 1 nbisL1-mrna-18785
Salicaceae Populus euphratica 1 populus_peu33067
Solanaceae Lycium barbarum 1 gene-LOC132614136
Solanaceae Solanum chilense 1 SOLCI005363100
Solanaceae Solanum pennellii 1 gene-LOC107003177
Tamaricaceae Reaumuria soongarica 1 gene_1857
Tamaricaceae Tamarix chinensis 1 TC04G2505
Zosteraceae Zostera marina 1 Zosma05g31090.v3.1
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