HalophFGD

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Basic Information
Locus ID: evm.TU.LG12.319
Species & Taxonomic ID: Nitraria sibirica & 357931
Genome Assembly:
Description: cationic amino acid transporter
Maps and Mapping Data
Chromosome Start End Strand ID
LG12 11295880 11297652 - evm.TU.LG12.319
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.62 65,080.34 Da 30.30 110.93 0.53
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13906 C-terminus of AA_permease 516 565 6.0E-17 IPR029485
Pfam PF13520 Amino acid permease 78 469 5.5E-49 IPR002293
Gene3D G3DSA:1.20.1740.10 Amino acid/polyamine transporter I 72 501 4.8E-95 -
Gene Ontology
Biological Process:
GO:0055085 (transmembrane transport)
Molecular Function:
GO:0022857 (transmembrane transporter activity)
Cellular Component:
GO:0016020 (membrane)
KEGG Pathway
KO Term:
K03294 (basic amino acid/polyamine antiporter, APA family)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G34960.1 cationic amino acid transporter 5. Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. Localized to the plasma membrane. 0
RefSeq XP_021901647.1 cationic amino acid transporter 5 [Carica papaya] 0
Swiss-Prot O64759 Cationic amino acid transporter 5 OS=Arabidopsis thaliana OX=3702 GN=CAT5 PE=1 SV=1 0
TrEMBL A0A2R6QAP1 Cationic amino acid transporter like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc20817 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 4 jg19207, jg20812, jg22319, jg3931
Aizoaceae Mesembryanthemum crystallinum 5 gene_12647, gene_22589, gene_22592, gene_4933, gene_5004
Amaranthaceae Atriplex hortensis 3 Ah007231, Ah007234, Ah016437
Amaranthaceae Beta vulgaris 3 BVRB_5g118540, BVRB_8g187560, BVRB_8g187580
Amaranthaceae Salicornia bigelovii 7 Sbi_jg19030, Sbi_jg25686, Sbi_jg25687, Sbi_jg32654 ...
Sbi_jg37458, Sbi_jg9522, Sbi_jg9523
Amaranthaceae Salicornia europaea 4 Seu_jg19107, Seu_jg19108, Seu_jg5301, Seu_jg7647
Amaranthaceae Suaeda aralocaspica 4 GOSA_00001681, GOSA_00013805, GOSA_00015293, GOSA_00016596
Amaranthaceae Suaeda glauca 10 Sgl21021, Sgl22376, Sgl25660, Sgl26377, Sgl27625, Sgl30811 ...
Sgl44465, Sgl49215, Sgl71646, Sgl75221
Amaranthaceae Chenopodium album 8 gene:ENSEOMG00000006817, gene:ENSEOMG00000009979 ...
gene:ENSEOMG00000011499, gene:ENSEOMG00000012329, gene:ENSEOMG00000028203, gene:ENSEOMG00000042226, gene:ENSEOMG00000043181, gene:ENSEOMG00000045097
Amaranthaceae Chenopodium quinoa 5 CQ.Regalona.r1.4AG0015680, CQ.Regalona.r1.4BG0016880 ...
CQ.Regalona.r1.4BG0021750, CQ.Regalona.r1.8AG0010440, CQ.Regalona.r1.8BG0011960
Anacardiaceae Pistacia vera 2 pistato.v30076150, pistato.v30199130
Apiaceae Apium graveolens 4 Ag3G02450, Ag7G00977, Ag7G00979, Ag7G01118
Arecaceae Cocos nucifera 7 COCNU_02G002670, COCNU_06G020590, COCNU_06G020600 ...
COCNU_12G000550, COCNU_14G008750, COCNU_14G008760, scaffold115654G000010
Arecaceae Phoenix dactylifera 7 gene-LOC103701403, gene-LOC103703712, gene-LOC103710508 ...
gene-LOC103715963, gene-LOC103715964, gene-LOC103720583, gene-LOC120108687
Asparagaceae Asparagus officinalis 2 AsparagusV1_01.2495.V1.1, AsparagusV1_06.12.V1.1
Asteraceae Flaveria trinervia 5 Ftri12G07092, Ftri17G12312, Ftri17G29035, Ftri3G07973 ...
Ftri8G28433
Brassicaceae Arabidopsis thaliana 3 AT1G17120.1, AT2G34960.1, AT4G21120.1
Brassicaceae Eutrema salsugineum 3 Thhalv10007175m.g.v1.0, Thhalv10016446m.g.v1.0 ...
Thhalv10024732m.g.v1.0
Brassicaceae Schrenkiella parvula 3 Sp1g15240.v2.2, Sp4g17250.v2.2, Sp7g19210.v2.2
Brassicaceae Brassica nigra 4 BniB01g009340.2N, BniB02g070810.2N, BniB03g022290.2N ...
BniB03g027320.2N
Casuarinaceae Casuarina equisetifolia 6 Ceq04G0069, Ceq04G0072, Ceq04G0541, Ceq04G0542, Ceq05G0582 ...
Ceq05G2034
Casuarinaceae Casuarina glauca 4 Cgl04G0092, Cgl04G0639, Cgl05G0605, Cgl07G2535
Cymodoceaceae Cymodocea nodosa 3 gene.Cymno09g10080, gene.Cymno11g07960, gene.Cymno13g02420
Dunaliellaceae Dunaliella salina 1 Dusal.0560s00007.v1.0
Hydrocharitaceae Thalassia testudinum 4 gene.Thate04g00750, gene.Thate04g00780, gene.Thate04g06300 ...
gene.Thate05g14940
Nitrariaceae Nitraria sibirica 4 evm.TU.LG12.153, evm.TU.LG12.314, evm.TU.LG12.315 ...
evm.TU.LG12.319
Plantaginaceae Plantago ovata 4 Pov_00003562, Pov_00008372, Pov_00013063, Pov_00038550
Plumbaginaceae Limonium bicolor 6 Lb2G15187, Lb2G15189, Lb2G15190, Lb2G15196, Lb7G34670 ...
Lb7G34689
Poaceae Echinochloa crus-galli 19 AH01.1258, AH01.2728, AH02.230, AH05.4044, AH05.4045 ...
AH05.4046, AH05.4047, AH06.1912, BH01.1465, BH01.1466, BH01.3061, BH02.239, BH05.4147, BH06.1756, CH01.3282, CH02.255, CH05.4368, CH06.1948, CH06.2663
Poaceae Eleusine coracana subsp. coracana 6 gene-QOZ80_1BG0050780, gene-QOZ80_3AG0224340 ...
gene-QOZ80_3BG0269340, gene-QOZ80_5AG0397880, gene-QOZ80_6AG0542150, gene-QOZ80_6BG0495390
Poaceae Hordeum vulgare 5 HORVU.MOREX.r3.2HG0191460.1.CDS1 ...
HORVU.MOREX.r3.3HG0246190.1.CDS1, HORVU.MOREX.r3.5HG0428960.1, HORVU.MOREX.r3.5HG0489610.1.CDS1, HORVU.MOREX.r3.5HG0508440.1
Poaceae Lolium multiflorum 7 gene-QYE76_001024, gene-QYE76_006044, gene-QYE76_046257 ...
gene-QYE76_047943, gene-QYE76_051176, gene-QYE76_063524, gene-QYE76_063525
Poaceae Oryza coarctata 7 Oco01G004850, Oco02G004850, Oco05G018840, Oco06G019630 ...
Oco12G010580, Oco23G010350, Oco24G010200
Poaceae Oryza sativa 5 LOC_Os01g11160.1, LOC_Os03g43970.1, LOC_Os03g43980.1 ...
LOC_Os06g34830.1, LOC_Os12g41890.1
Poaceae Paspalum vaginatum 6 gene-BS78_01G144900, gene-BS78_03G021500 ...
gene-BS78_04G307600, gene-BS78_05G146700, gene-BS78_08G146400, gene-BS78_10G157200
Poaceae Puccinellia tenuiflora 3 Pt_Chr0301272, Pt_Chr0701667, Pt_Chr0704433
Poaceae Sporobolus alterniflorus 9 Chr01G009430, Chr02G028070, Chr02G028570, Chr05G005770 ...
Chr05G006270, Chr06G011310, Chr06G019860, Chr10G015870, Chr12G027590
Poaceae Thinopyrum elongatum 4 Tel2E01G723700, Tel5E01G099200, Tel5E01G410800 ...
Tel5E01G597300
Poaceae Triticum dicoccoides 5 gene_TRIDC2AG061430, gene_TRIDC2BG065140 ...
gene_TRIDC5AG006550, gene_TRIDC5AG054960, gene_TRIDC5BG007640
Poaceae Triticum aestivum 14 TraesCS2A02G425919.1.cds1, TraesCS2B02G446235.1.cds1 ...
TraesCS2D02G423900.1.cds1, TraesCS3A02G133100.1.cds1, TraesCS3B02G166500.1.cds1, TraesCS3D02G149300.1.cds1, TraesCS5A02G042900.1, TraesCS5A02G256600.1.cds1, TraesCS5A02G375600.1, TraesCS5B02G046500.1, TraesCS5B02G256000.1.cds1, TraesCS5D02G051400.1, TraesCS5D02G265100.1.cds1, TraesCS5D02G385125.1
Poaceae Zea mays 4 Zm00001eb050630_P001, Zm00001eb120240_P001 ...
Zm00001eb136100_P001, Zm00001eb277830_P001
Poaceae Zoysia japonica 6 nbis-gene-10283, nbis-gene-19335, nbis-gene-24369 ...
nbis-gene-32632, nbis-gene-39602, nbis-gene-44525
Poaceae Zoysia macrostachya 6 Zma_g25333, Zma_g30662, Zma_g32900, Zma_g7257, Zma_g873 ...
Zma_g9584
Portulacaceae Portulaca oleracea 10 evm.TU.LG01.2223, evm.TU.LG01.859, evm.TU.LG06.841 ...
evm.TU.LG11.16, evm.TU.LG13.945, evm.TU.LG14.1399, evm.TU.LG19.415, evm.TU.LG21.607, evm.TU.LG23.152, evm.TU.LG24.145
Posidoniaceae Posidonia oceanica 3 gene.Posoc04g23790, gene.Posoc08g07290, gene.Posoc10g05030
Rhizophoraceae Bruguiera sexangula 5 evm.TU.Scaffold_14_RagTag.957, evm.TU.Scaffold_14_RagTag.958 ...
evm.TU.Scaffold_16_RagTag.863, evm.TU.Scaffold_4_RagTag.1528, evm.TU.Scaffold_6_RagTag.1008
Rhizophoraceae Carallia pectinifolia 8 nbisL1-mrna-15654, nbisL1-mrna-16730, nbisL1-mrna-16731 ...
nbisL1-mrna-16805, nbisL1-mrna-16806, nbisL1-mrna-25034, nbisL1-mrna-25035, nbisL1-mrna-26212
Rhizophoraceae Ceriops tagal 5 nbisL1-mrna-11446, nbisL1-mrna-13963, nbisL1-mrna-19453 ...
nbisL1-mrna-19454, nbisL1-mrna-5232
Rhizophoraceae Ceriops zippeliana 5 nbisL1-mrna-17260, nbisL1-mrna-17261, nbisL1-mrna-19227 ...
nbisL1-mrna-4357, nbisL1-mrna-861
Rhizophoraceae Kandelia candel 5 add.evm.TU.utg000008l.326, add.evm.TU.utg000011l.242 ...
add.evm.TU.utg000025l.55, evm.TU.utg000022l.59, evm.TU.utg000025l.122
Rhizophoraceae Kandelia obovata 4 Maker00000634, Maker00008243, Maker00012273, Maker00016189
Rhizophoraceae Rhizophora apiculata 5 nbisL1-mrna-17578, nbisL1-mrna-20177, nbisL1-mrna-22267 ...
nbisL1-mrna-56, nbisL1-mrna-8644
Rhizophoraceae Rhizophora mangle 5 nbisL1-mrna-10286, nbisL1-mrna-3572, nbisL1-mrna-9173 ...
nbisL1-mrna-9174, nbisL1-mrna-9635
Salicaceae Populus euphratica 7 populus_peu00678, populus_peu29190, populus_peu30547 ...
populus_peu34666, populus_peu37516, populus_peu38149, populus_peu38158
Solanaceae Lycium barbarum 5 gene-LOC132601915, gene-LOC132621762, gene-LOC132623046 ...
gene-LOC132625192, gene-LOC132636527
Solanaceae Solanum chilense 5 SOLCI000152600, SOLCI000768200, SOLCI001265500 ...
SOLCI003092800, SOLCI006925700
Solanaceae Solanum pennellii 5 gene-LOC107005389, gene-LOC107006577, gene-LOC107010806 ...
gene-LOC107011810, gene-LOC107011849
Tamaricaceae Reaumuria soongarica 4 gene_16603, gene_2525, gene_510, gene_6278
Tamaricaceae Tamarix chinensis 3 TC01G0289, TC05G0410, TC07G2203
Zosteraceae Zostera marina 2 Zosma03g23710.v3.1, Zosma256g00020.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.