Basic Information
Locus ID:
evm.TU.LG12.170
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 7726398 | 7727489 | - | evm.TU.LG12.170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 40,672.25 Da | 64.18 | 76.75 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 167 | 210 | 5.43921E-16 | - |
| Pfam | PF13639 | Ring finger domain | 167 | 210 | 2.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 217 | 2.78E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 218 | 3.0E-22 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 164 | 217 | 0.0022 | - |
| SMART | SM00184 | ring_2 | 168 | 209 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 168 | 210 | 12.84335 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 270 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031286010.1 | E3 ubiquitin-protein ligase RING1-like [Pistacia vera] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067DGI2 | RING-type E3 ubiquitin transferase OS=Citrus sinensis OX=2711 GN=CISIN_1g018110mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology