Basic Information
Locus ID:
evm.TU.LG12.1609
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 40144147 | 40149176 | + | evm.TU.LG12.1609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 47,591.10 Da | 46.77 | 68.17 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 137 | 211 | 3.23555E-51 | - |
| CDD | cd12354 | RRM3_TIA1_like | 257 | 332 | 2.07554E-33 | - |
| CDD | cd12352 | RRM1_TIA1_like | 53 | 123 | 3.94038E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 138 | 208 | 1.7E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 259 | 316 | 3.6E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 53 | 119 | 5.0E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 249 | 339 | 2.99E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 49 | 215 | 7.47E-44 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 133 | 236 | 3.8E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 237 | 336 | 1.4E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 132 | 2.8E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 52 | 121 | 1.8E-16 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 137 | 210 | 0.0085 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 258 | 328 | 8.2E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 137 | 210 | 3.7E-24 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 136 | 214 | 16.909462 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 257 | 332 | 14.999257 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 51 | 125 | 14.982202 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 255 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021720428.1 | oligouridylate-binding protein 1B-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KQY9 | Oligouridylate-binding protein 1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology