Basic Information
Locus ID:
evm.TU.LG12.1521
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 38403763 | 38407254 | - | evm.TU.LG12.1521 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 53,818.30 Da | 43.00 | 85.79 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 31 | 69 | 2.0E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 30 | 85 | 7.33E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 30 | 67 | 7.7E-6 | - |
| SMART | SM00256 | fbox_2 | 30 | 70 | 1.1E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 24 | 70 | 9.285514 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_028788272.1 | F-box/kelch-repeat protein At3g06240-like [Prosopis alba] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9AYU5 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G723400 |
| Portulacaceae | Portulaca oleracea | 23 | evm.TU.LG03.1144, evm.TU.LG03.179, evm.TU.LG03.180 ... |