Basic Information
Locus ID:
evm.TU.LG12.1498
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 38237928 | 38238839 | - | evm.TU.LG12.1498 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 17,678.67 Da | 32.08 | 76.12 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 86 | 156 | 1.52702E-32 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 154 | 8.9E-30 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 15 | 93 | 8.02E-28 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 86 | 156 | 1.09E-25 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 86 | 160 | 5.6E-35 | - |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 85 | 2.3E-43 | IPR014722 |
| SMART | SM01376 | eIF_5a_2 | 85 | 154 | 6.8E-35 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 17 | 152 | 1.7E-42 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 158 | 6.1E-68 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 0 |
| RefSeq | XP_028785342.1 | eukaryotic translation initiation factor 5A-2-like [Prosopis alba] | 0 |
| P69039 | Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5D3D8W1 | Eukaryotic translation initiation factor 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001220 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology