Basic Information
Locus ID:
evm.TU.LG12.1188
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 23103746 | 23104369 | + | evm.TU.LG12.1188 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 22,262.67 Da | 55.14 | 66.42 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 159 | 196 | 3.87428E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 156 | 201 | 5.4E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 153 | 204 | 6.36E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 206 | 2.9E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 159 | 196 | 3.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 159 | 197 | 10.895954 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 75 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006449819.1 | uncharacterized protein LOC18050953 [Citrus clementina] | 0 |
| TrEMBL | V4W9T1 | RING-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10017636mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology