Basic Information
Locus ID:
evm.TU.LG12.1172
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
High Mobility Group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 34532106 | 34534030 | - | evm.TU.LG12.1172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 36,360.95 Da | 55.72 | 64.53 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 29 | 113 | 2.80201E-40 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 242 | 306 | 1.13024E-17 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 30 | 113 | 1.1E-18 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 242 | 309 | 4.4E-11 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 22 | 127 | 7.33E-31 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 239 | 311 | 4.19E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 227 | 308 | 2.1E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 18 | 122 | 1.9E-26 | IPR036431 |
| SMART | SM00501 | bright_3 | 27 | 118 | 3.4E-31 | IPR001606 |
| SMART | SM00398 | hmgende2 | 241 | 310 | 3.6E-12 | IPR009071 |
| SMART | SM01014 | ARID_2 | 23 | 113 | 2.8E-31 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 26 | 117 | 26.36347 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 242 | 309 | 13.833054 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 241 | - | - |
| Coils | Coil | Coil | 298 | 318 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010692487.1 | high mobility group B protein 9 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9CME3 | High mobility group B protein 9 OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology