Basic Information
Locus ID:
evm.TU.LG12.1152
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 34291761 | 34293795 | + | evm.TU.LG12.1152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 46,840.54 Da | 38.31 | 75.41 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 129 | 164 | 4.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 255 | 285 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 290 | 324 | 0.15 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 127 | 414 | 8.24E-48 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 97 | 119 | 4.71E-6 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 269 | 423 | 2.6E-23 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 23 | 119 | 3.2E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 120 | 268 | 4.0E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 248 | 285 | 0.0036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 378 | 412 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 202 | 90.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 372 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 288 | 325 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 125 | 164 | 8.5E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 96 | 120 | 0.11 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 23 | 48 | 0.0032 | IPR000571 |
| SMART | SM00320 | WD40_4 | 204 | 241 | 37.0 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 99 | 121 | 11.178288 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 255 | 288 | 9.862871 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 11.328514 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 132 | 173 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 132 | 164 | 10.548323 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 255 | 294 | 13.081652 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 272 | 286 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 312 | 326 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 151 | 165 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 272 | 286 | 1.4E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_048491280.1 | zinc finger CCCH domain-containing protein 48 [Beta vulgaris subsp. vulgaris] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8S0V1W1 | Zinc finger CCCH domain-containing 48 OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A107971 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology