halophFGD

Basic Information

Locus ID: evm.TU.LG12.1134

Species & Taxonomic ID: Nitraria sibirica & 357931

Genome Assembly:

Description: Belongs to the ATG8 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG12	22657091	22665454	+	evm.TU.LG12.1134

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.94	17,174.67 Da	35.71	90.27	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16128	Ubl_ATG8	41	143	5.58758E-72	-
Pfam	PF02991	Autophagy protein Atg8 ubiquitin like	43	146	5.4E-51	IPR004241
SUPERFAMILY	SSF54236	Ubiquitin-like	32	146	1.76E-43	IPR029071
Gene3D	G3DSA:3.10.20.90	-	19	147	8.4E-60	-

KEGG Pathway

KO Term:

K08341 (GABA(A) receptor-associated protein)

Pathway:

ko04068 (FoxO signaling pathway) map04068 (FoxO signaling pathway) ko04136 (Autophagy - other) map04136 (Autophagy - other) ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal) ko04138 (Autophagy - yeast) map04138 (Autophagy - yeast) ko04139 (Mitophagy - yeast) map04139 (Mitophagy - yeast) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) ko04212 (Longevity regulating pathway - worm) map04212 (Longevity regulating pathway - worm) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway) map04621 (NOD-like receptor signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G62040.1	Ubiquitin-like superfamily protein.
RefSeq	XP_003581707.1	autophagy-related protein 8C [Brachypodium distachyon]
Swiss-Prot	A2YS06	Autophagy-related protein 8C OS=Oryza sativa subsp. indica OX=39946 GN=ATG8C PE=3 SV=2
TrEMBL	I1GKD3	Autophagy-related protein OS=Brachypodium distachyon OX=15368 GN=100827349 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg20428, jg21521, jg24548, jg38386, jg4903
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1954, gene_7272
Amaranthaceae	Atriplex hortensis	2	Ah004802, Ah017517
Amaranthaceae	Beta vulgaris	1	BVRB_8g186120
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg18185, Sbi_jg24379, Sbi_jg36529, Sbi_jg40157 ... Sbi_jg50100
Amaranthaceae	Salicornia europaea	3	Seu_jg11805, Seu_jg1734, Seu_jg4532
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00001556, GOSA_00006679, GOSA_00011330
Amaranthaceae	Suaeda glauca	6	Sgl23371, Sgl28486, Sgl46324, Sgl51038, Sgl51548, Sgl56832
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000004967, gene:ENSEOMG00000009623 ... gene:ENSEOMG00000011899, gene:ENSEOMG00000021276, gene:ENSEOMG00000024792, gene:ENSEOMG00000028186, gene:ENSEOMG00000033809, gene:ENSEOMG00000043967, gene:ENSEOMG00000047854
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.4AG0022700, CQ.Regalona.r1.4BG0023920 ... CQ.Regalona.r1.5AG0000210, CQ.Regalona.r1.5BG0000240, CQ.Regalona.r1.8BG0001590
Anacardiaceae	Pistacia vera	6	pistato.v30002560, pistato.v30018420, pistato.v30069320 ... pistato.v30142710, pistato.v30156530, pistato.v30158410
Apiaceae	Apium graveolens	4	Ag4G02386, Ag6G00614, Ag8G01081, AgUnG01336
Arecaceae	Cocos nucifera	4	COCNU_06G012210, COCNU_09G003200, COCNU_14G008040 ... scaffold001580G000020
Arecaceae	Phoenix dactylifera	4	gene-LOC103705136, gene-LOC103717620, gene-LOC103720494 ... gene-LOC103720683
Asparagaceae	Asparagus officinalis	7	AsparagusV1_03.1193.V1.1, AsparagusV1_04.3529.V1.1 ... AsparagusV1_06.169.V1.1, AsparagusV1_07.3789.V1.1, AsparagusV1_08.213.V1.1, AsparagusV1_08.2484.V1.1, AsparagusV1_10.18.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G20793, Ftri16G15905, Ftri16G24720, Ftri2G17114 ... Ftri5G07793
Brassicaceae	Arabidopsis thaliana	7	AT1G62040.2, AT2G05630.2, AT2G45170.1, AT3G60640.1 ... AT4G04620.1, AT4G16520.1, AT4G21980.2
Brassicaceae	Eutrema salsugineum	6	Thhalv10006314m.g.v1.0, Thhalv10009130m.g.v1.0 ... Thhalv10023763m.g.v1.0, Thhalv10026531m.g.v1.0, Thhalv10026582m.g.v1.0, Thhalv10029077m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp2g02520.v2.2, Sp3g24090.v2.2, Sp4g27220.v2.2 ... Sp5g02600.v2.2, Sp6g04260.v2.2, Sp7g15090.v2.2, Sp7g20170.v2.2, SpUn0031_0100.v2.2
Brassicaceae	Brassica nigra	10	BniB02g010840.2N, BniB02g059100.2N, BniB02g073200.2N ... BniB05g015080.2N, BniB05g019790.2N, BniB05g056100.2N, BniB06g055310.2N, BniB07g022230.2N, BniB08g029440.2N, BniB08g047680.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1342, Ceq02G2428, Ceq03G0129, Ceq04G1611, Ceq05G1145
Casuarinaceae	Casuarina glauca	6	Cgl01G1504, Cgl02G2496, Cgl02G2510, Cgl03G0141, Cgl04G1790 ... Cgl05G1156
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno03g07670, gene.Cymno13g01380, gene.Cymno17g05370 ... gene.Cymno18g04160
Dunaliellaceae	Dunaliella salina	1	Dusal.0066s00009.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g19110, gene.Thate04g16640, gene.Thate08g06660
Malvaceae	Hibiscus hamabo Siebold & Zucc.	6	nbisL1-mrna-1016, nbisL1-mrna-11142, nbisL1-mrna-2541 ... nbisL1-mrna-2772, nbisL1-mrna-2781, nbisL1-mrna-4834
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG04.147, evm.TU.LG04.2069, evm.TU.LG05.1886 ... evm.TU.LG10.1215, evm.TU.LG12.1134
Plantaginaceae	Plantago ovata	3	Pov_00005930, Pov_00008820, Pov_00039041
Plumbaginaceae	Limonium bicolor	6	Lb0G37232, Lb2G10002, Lb2G10034, Lb2G11251, Lb4G22083 ... Lb5G28293
Poaceae	Echinochloa crus-galli	6	AH03.3146, AH09.2345, BH03.3332, BH08.579, BH09.2542 ... CH09.2777
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_4AG0303440, gene-QOZ80_4BG0334350 ... gene-QOZ80_7BG0600590, gene-QOZ80_8AG0619930, gene-QOZ80_8BG0647810
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0141620.1, HORVU.MOREX.r3.2HG0194650.1
Poaceae	Lolium multiflorum	3	gene-QYE76_041023, gene-QYE76_041037, gene-QYE76_046407
Poaceae	Oryza coarctata	7	Oco07G016340, Oco08G015790, Oco13G008450, Oco14G008910 ... Oco15G003690, Oco16G003610, Oco23G003440
Poaceae	Oryza sativa	3	LOC_Os04g53240.4, LOC_Os07g32800.2, LOC_Os08g09240.1
Poaceae	Paspalum vaginatum	2	gene-BS78_06G234600, gene-BS78_07G073900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0301108, Pt_Chr0307444
Poaceae	Sporobolus alterniflorus	11	Chr16G002470, Chr17G002180, Chr19G005720, Chr20G012470 ... Chr23G004730, Chr25G002780, Chr26G015950, Chr27G011580, Chr28G007750, Chr29G010200, Chr30G002780
Poaceae	Thinopyrum elongatum	2	Tel2E01G416900, Tel2E01G790200
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG066400, gene_TRIDC2BG071430
Poaceae	Triticum aestivum	5	TraesCS2A02G224000.1, TraesCS2A02G468300.1 ... TraesCS2B02G274200.1, TraesCS2B02G491200.1, TraesCS2D02G229900.1
Poaceae	Zea mays	5	Zm00001eb070240_P001, Zm00001eb105850_P001 ... Zm00001eb171400_P001, Zm00001eb413320_P001, Zm00001eb431210_P001
Poaceae	Zoysia japonica	3	nbis-gene-38905, nbis-gene-48540, nbis-gene-5882
Poaceae	Zoysia macrostachya	4	Zma_g21988, Zma_g22601, Zma_g23730, Zma_g5221
Portulacaceae	Portulaca oleracea	8	evm.TU.LG02.1587, evm.TU.LG04.3548, evm.TU.LG09.387 ... evm.TU.LG10.154, evm.TU.LG16.31, evm.TU.LG17.150, evm.TU.LG18.878, evm.TU.LG20.991
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g19320, gene.Posoc07g03920, gene.Posoc10g03230
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.1002, evm.TU.Scaffold_13_RagTag.55 ... evm.TU.Scaffold_14_RagTag.345, evm.TU.Scaffold_16_RagTag.326, evm.TU.Scaffold_5_RagTag.1517
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-12004, nbisL1-mrna-18023, nbisL1-mrna-20416 ... nbisL1-mrna-20483, nbisL1-mrna-23953, nbisL1-mrna-29764, nbisL1-mrna-8318, nbisL1-mrna-8395, nbisL1-mrna-8672
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-1187, nbisL1-mrna-12279, nbisL1-mrna-14869 ... nbisL1-mrna-19041, nbisL1-mrna-5433, nbisL1-mrna-8817
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10979, nbisL1-mrna-20209, nbisL1-mrna-20782 ... nbisL1-mrna-21347, nbisL1-mrna-21705
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000003l.841, evm.TU.utg000006l.872 ... evm.TU.utg000007l.165, evm.TU.utg000015l.38, evm.TU.utg000022l.300, evm.TU.utg000027l.33
Rhizophoraceae	Kandelia obovata	5	Maker00009248, Maker00013854, Maker00014190, Maker00015958 ... Maker00017401
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-10400, nbisL1-mrna-1216, nbisL1-mrna-16140 ... nbisL1-mrna-3439, nbisL1-mrna-6054, nbisL1-mrna-9450
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-15464, nbisL1-mrna-22750, nbisL1-mrna-23435 ... nbisL1-mrna-4718, nbisL1-mrna-6556
Salicaceae	Populus euphratica	8	populus_peu03379, populus_peu10340, populus_peu16400 ... populus_peu16412, populus_peu18491, populus_peu27021, populus_peu31812, populus_peu34231
Solanaceae	Lycium barbarum	6	gene-LOC132609823, gene-LOC132616552, gene-LOC132616774 ... gene-LOC132621576, gene-LOC132628164, gene-LOC132635085
Solanaceae	Solanum chilense	6	SOLCI000918800, SOLCI002510700, SOLCI003123000 ... SOLCI004698400, SOLCI005205100, SOLCI006737200
Solanaceae	Solanum pennellii	6	gene-LOC107011693, gene-LOC107012830, gene-LOC107024185 ... gene-LOC107026670, gene-LOC107028794, gene-LOC107032079
Tamaricaceae	Reaumuria soongarica	5	STRG.23131_chr05_-, STRG.30346_chr10_+, gene_13136 ... gene_1518, gene_17840
Tamaricaceae	Tamarix chinensis	4	TC01G2322, TC03G2630, TC05G2970, TC08G0087
Zosteraceae	Zostera marina	4	Zosma02g05600.v3.1, Zosma04g22010.v3.1, Zosma04g26530.v3.1 ... Zosma06g03630.v3.1