Basic Information
Locus ID:
evm.TU.LG12.11
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 257391 | 263844 | - | evm.TU.LG12.11 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.98 | 156,981.52 Da | 33.94 | 104.73 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1156 | 1377 | 7.11595E-121 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 843 | 1133 | 3.80735E-82 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 235 | 521 | 3.66059E-88 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 545 | 750 | 2.24996E-97 | - |
| Pfam | PF00005 | ABC transporter | 572 | 702 | 1.5E-15 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1175 | 1324 | 8.9E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 861 | 1083 | 9.1E-26 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 234 | 500 | 2.2E-20 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 225 | 528 | 5.89E-31 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 845 | 1140 | 1.44E-47 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1150 | 1386 | 2.19E-64 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 570 | 763 | 9.21E-48 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 809 | 1139 | 9.9E-54 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 202 | 530 | 3.3E-44 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 559 | 800 | 1.6E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1141 | 1395 | 7.1E-78 | IPR027417 |
| SMART | SM00382 | AAA_5 | 576 | 750 | 1.0E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1184 | 1372 | 1.1E-10 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 237 | 513 | 30.886343 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 845 | 1121 | 32.513939 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 545 | 773 | 20.094824 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1158 | 1393 | 17.040285 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 675 | 689 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_010682873.2 | putative ABC transporter C family member 15 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M6U6 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology