Basic Information
Locus ID:
evm.TU.LG12.1040
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 21721074 | 21724401 | + | evm.TU.LG12.1040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 65,471.55 Da | 53.11 | 90.00 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 80 | 126 | 4.4E-23 | IPR041101 |
| Pfam | PF18511 | F-box | 21 | 60 | 1.3E-19 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 168 | 185 | 0.3 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 44 | 560 | 3.66E-38 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 54 | 4.74E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 59 | 9.1E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 61 | 585 | 1.2E-173 | IPR032675 |
| SMART | SM00256 | fbox_2 | 23 | 64 | 0.001 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 494 | 518 | 51.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 118 | 142 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 327 | 350 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 385 | 409 | 7.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 445 | 468 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 143 | 168 | 130.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_044494961.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Mangifera indica] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0H3YCH4 | Transport inhibitor response 1-like protein OS=Dimocarpus longan OX=128017 GN=TIR1-1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology