halophFGD

Basic Information

Locus ID: evm.TU.LG11.903

Species & Taxonomic ID: Nitraria sibirica & 357931

Genome Assembly:

Description: Ring finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG11	20950936	20956362	-	evm.TU.LG11.903

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.97	69,497.60 Da	61.01	65.89	-0.82

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13923	Zinc finger, C3HC4 type (RING finger)	22	62	4.0E-7	-
SUPERFAMILY	SSF57850	RING/U-box	18	86	1.14E-9	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	6	107	1.6E-17	IPR013083
SMART	SM00184	ring_2	22	62	0.0034	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	22	63	11.146755	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	293	453	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	303	418	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	128	148	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	182	221	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	230	281	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	166	281	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	166	181	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	90	114	-	-

KEGG Pathway

KO Term:

K16277 (E3 ubiquitin-protein ligase DRIP [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT2G30580.3	-
RefSeq	XP_044484893.1	E3 ubiquitin protein ligase DRIP2-like isoform X1 [Mangifera indica]
Swiss-Prot	Q94AY3	E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1
TrEMBL	V4U282	RING-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10005027mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for evm.TU.LG11.903.