Basic Information
Locus ID:
evm.TU.LG11.604
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 26110708 | 26132525 | - | evm.TU.LG11.604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 147,299.53 Da | 41.94 | 76.81 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 744 | 876 | 1.8806E-70 | - |
| CDD | cd17920 | DEXHc_RecQ | 543 | 743 | 4.42308E-103 | - |
| Pfam | PF16124 | RecQ zinc-binding | 878 | 959 | 5.5E-16 | IPR032284 |
| Pfam | PF09382 | RQC domain | 967 | 1082 | 1.4E-23 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 760 | 865 | 5.8E-17 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 555 | 723 | 2.8E-19 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 1124 | 1193 | 8.5E-16 | IPR002121 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 518 | 886 | 4.22E-40 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1124 | 1205 | 4.36E-15 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 742 | 1011 | 6.14E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 744 | 962 | 2.2E-64 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1117 | 1206 | 2.3E-22 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 963 | 1080 | 3.1E-20 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 516 | 743 | 6.5E-92 | IPR027417 |
| SMART | SM00487 | ultradead3 | 549 | 752 | 1.1E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 786 | 867 | 8.9E-27 | IPR001650 |
| SMART | SM00341 | hrdc7 | 1120 | 1203 | 2.0E-10 | IPR002121 |
| SMART | SM00956 | RQC_2 | 969 | 1080 | 9.7E-31 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 545 | 1020 | 8.7E-165 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 561 | 736 | 21.342274 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 754 | 912 | 18.939053 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1120 | 1203 | 19.275532 | IPR002121 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 776 | 817 | 8.718557 | IPR001763 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 675 | 684 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1201 | 1266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1213 | 1232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1252 | 1266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1282 | 1306 | - | - |
| Coils | Coil | Coil | 395 | 415 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_010691128.1 | ATP-dependent DNA helicase Q-like 4A [Beta vulgaris subsp. vulgaris] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R0B5 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_127980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology