Basic Information
Locus ID:
evm.TU.LG11.589
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 15092917 | 15101577 | - | evm.TU.LG11.589 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 84,847.07 Da | 44.48 | 63.46 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 496 | 781 | 8.29211E-61 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 544 | 574 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 748 | 781 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 505 | 532 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 663 | 698 | 3.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 580 | 618 | 0.002 | IPR001680 |
| Pfam | PF08513 | LisH | 12 | 38 | 4.4E-7 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 494 | 781 | 5.23E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 433 | 629 | 2.3E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 630 | 781 | 1.0E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 535 | 574 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 701 | 740 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 578 | 618 | 5.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 660 | 698 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 532 | 3.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 742 | 781 | 2.2E-4 | IPR001680 |
| SMART | SM00667 | Lish | 10 | 42 | 0.0011 | IPR006594 |
| SMART | SM00320 | WD40_4 | 621 | 657 | 400.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 749 | 781 | 11.391954 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 585 | 627 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 10 | 42 | 9.48443 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 667 | 707 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 500 | 535 | 8.861059 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 500 | 541 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 542 | 574 | 11.154684 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 749 | 781 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 542 | 574 | 13.449252 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 519 | 533 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 519 | 533 | 1.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 561 | 575 | 1.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 768 | 781 | 1.0E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 407 | - | - |
| Coils | Coil | Coil | 87 | 109 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_044486030.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X3 [Mangifera indica] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | V4S1F3 | LisH domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10004358mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology