Basic Information
Locus ID:
evm.TU.LG11.588
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 15046938 | 15057048 | - | evm.TU.LG11.588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 20,654.25 Da | 47.91 | 79.45 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 49 | 86 | 0.032 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 147 | 183 | 4.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 12 | 42 | 2.4E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 183 | 3.66E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 136 | 183 | 2.7E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 135 | 1.3E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 46 | 86 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3 | 42 | 2.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 145 | 183 | 1.4E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 151 | 183 | 11.550137 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 151 | 183 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 10 | 42 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 10 | 42 | 11.101955 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_031267096.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X4 [Pistacia vera] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8D7S0 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_014388 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology