Basic Information
Locus ID:
evm.TU.LG11.564
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 14239267 | 14243902 | - | evm.TU.LG11.564 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 51,960.70 Da | 48.34 | 64.92 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 36 | 121 | 8.08916E-48 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 259 | 323 | 8.54397E-22 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 38 | 121 | 1.2E-16 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 259 | 326 | 9.8E-16 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 32 | 133 | 2.49E-28 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 252 | 330 | 3.93E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 243 | 338 | 5.9E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 29 | 138 | 4.5E-26 | IPR036431 |
| SMART | SM01014 | ARID_2 | 31 | 121 | 1.9E-26 | - |
| SMART | SM00398 | hmgende2 | 258 | 327 | 7.6E-20 | IPR009071 |
| SMART | SM00501 | bright_3 | 35 | 126 | 4.6E-29 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 34 | 125 | 25.698874 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 259 | 326 | 15.464235 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 424 | - | - |
| Coils | Coil | Coil | 308 | 328 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_024046665.1 | LOW QUALITY PROTEIN: high mobility group B protein 15 [Citrus clementina] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2H5QEK6 | High mobility group B protein 15 OS=Citrus unshiu OX=55188 GN=CUMW_222260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology