Basic Information
Locus ID:
evm.TU.LG11.481
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 20953234 | 20960504 | - | evm.TU.LG11.481 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 101,357.36 Da | 59.26 | 71.12 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 849 | 887 | 2.01031E-16 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 847 | 893 | 6.5E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 840 | 900 | 6.4E-10 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 849 | 888 | 10.099292 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 86 | - | - |
| Coils | Coil | Coil | 777 | 804 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_021732900.1 | uncharacterized protein LOC110699684 [Chenopodium quinoa] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9F993 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology