Basic Information
Locus ID:
evm.TU.LG11.1676
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
A domain family that is part of the cupin metalloenzyme superfamily.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 43192690 | 43199579 | - | evm.TU.LG11.1676 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 173,549.86 Da | 45.35 | 65.87 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02208 | cupin_RmlC-like | 1452 | 1501 | 0.00128726 | - |
| Pfam | PF02373 | JmjC domain, hydroxylase | 1413 | 1512 | 4.5E-15 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1157 | 1550 | 5.77E-36 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1144 | 1538 | 3.7E-156 | - |
| SMART | SM00384 | AT_hook_2 | 594 | 606 | 2.8 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 800 | 812 | 5.9 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 644 | 656 | 3.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 477 | 489 | 8.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 546 | 558 | 0.63 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 745 | 757 | 2.4 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 714 | 726 | 12.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 304 | 316 | 1.2 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 428 | 440 | 4.9 | IPR017956 |
| SMART | SM00558 | cupin_9 | 1258 | 1529 | 2.0E-69 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 881 | 928 | 9.361642 | IPR001841 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1277 | 1529 | 27.662535 | IPR003347 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 7 | 52 | 13.294262 | IPR014977 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1382 | 1408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 770 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1382 | 1400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 322 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00990.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_010671439.2 | uncharacterized protein LOC104888238 isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VYB9 | Lysine-specific demethylase JMJ27 OS=Arabidopsis thaliana OX=3702 GN=JMJ27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RDM9 | WRC domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_078840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology