Basic Information
Locus ID:
evm.TU.LG11.1581
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 41424528 | 41429959 | - | evm.TU.LG11.1581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 48,063.86 Da | 32.59 | 70.23 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 147 | 184 | 2.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 272 | 305 | 0.007 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 344 | 0.011 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 118 | 138 | 3.3E-7 | IPR041367 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 114 | 139 | 5.23E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 147 | 436 | 8.06E-47 | IPR036322 |
| Gene3D | G3DSA:3.30.1370.210 | - | 15 | 67 | 2.7E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 269 | 441 | 2.4E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 129 | 268 | 1.1E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 145 | 184 | 8.3E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 116 | 140 | 5.8E-6 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 34 | 59 | 0.038 | IPR000571 |
| SMART | SM00320 | WD40_4 | 224 | 261 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 268 | 305 | 4.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 345 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 395 | 432 | 4.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 392 | 6.5 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 114 | 141 | 14.595921 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 34 | 60 | 11.037452 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 275 | 308 | 9.810144 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 152 | 193 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 152 | 184 | 10.311051 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 275 | 314 | 12.780889 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 292 | 306 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 171 | 185 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 292 | 306 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 332 | 346 | 1.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_010693461.2 | zinc finger CCCH domain-containing protein 48 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QWH9 | Zinc finger CCCH domain-containing protein 48-like OS=Spinacia oleracea OX=3562 GN=SOVF_133470 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology