Basic Information
Locus ID:
evm.TU.LG11.1519
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Zinc finger MYM-type protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 40724590 | 40731140 | - | evm.TU.LG11.1519 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.92 | 41,395.10 Da | 57.40 | 79.64 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 68 | 104 | 1.8E-8 | IPR001810 |
| Pfam | PF00646 | F-box domain | 230 | 267 | 1.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 64 | 123 | 2.35E-15 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 226 | 285 | 7.46E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 230 | 266 | 1.7E-8 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 68 | 105 | 1.2E-8 | - |
| SMART | SM00256 | fbox_2 | 231 | 271 | 1.5E-9 | IPR001810 |
| SMART | SM00256 | fbox_2 | 69 | 109 | 3.3E-9 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 68 | 109 | 9.02057 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 225 | 271 | 8.994076 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 213 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51320.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021739148.1 | F-box/kelch-repeat protein At3g06240-like [Chenopodium quinoa] | 0 |
| Q9SYD4 | Putative F-box only protein 11 OS=Arabidopsis thaliana OX=3702 GN=FBX11 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8S0TPJ7 | F-box kelch-repeat At3g23880-like OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A089832 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG06.1970, evm.TU.LG11.1517, evm.TU.LG11.1519 ... |