Basic Information
Locus ID:
evm.TU.LG11.1353
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 25805556 | 25808785 | + | evm.TU.LG11.1353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 29,841.18 Da | 51.70 | 55.77 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 187 | 245 | 1.4E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 5 | 85 | 1.7E-21 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 76 | 133 | 1.7E-20 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 3 | 74 | 3.4E-18 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 139 | 190 | 8.35E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 212 | 1.3E-8 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 213 | 251 | 1.9E-18 | - |
| SMART | SM00184 | ring_2 | 140 | 182 | 0.0019 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 75 | 139 | 34.739422 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1 | 73 | 24.988115 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 140 | 183 | 10.881201 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021290487.1 | E3 ubiquitin-protein ligase MIEL1 [Herrania umbratica] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J1ATD5 | E3 ubiquitin-protein ligase MIEL1 OS=Herrania umbratica OX=108875 GN=LOC110421263 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology