halophFGD

Basic Information

Locus ID: evm.TU.LG11.1334

Species & Taxonomic ID: Nitraria sibirica & 357931

Genome Assembly:

Description: mTERF

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG11	25607268	25614263	-	evm.TU.LG11.1334

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.55	125,196.30 Da	49.55	90.74	-0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02536	mTERF	598	705	1.1E-16	IPR003690
Pfam	PF02536	mTERF	81	301	9.4E-29	IPR003690
Pfam	PF02536	mTERF	885	1069	2.6E-22	IPR003690
Pfam	PF02536	mTERF	795	1005	7.7E-28	IPR003690
Pfam	PF02536	mTERF	248	355	1.0E-15	IPR003690
Pfam	PF02536	mTERF	432	641	1.1E-23	IPR003690
Gene3D	G3DSA:1.25.70.10	Transcription termination factor 3, mitochondrial	146	367	9.0E-43	IPR038538
Gene3D	G3DSA:1.25.70.10	Transcription termination factor 3, mitochondrial	877	1084	1.1E-45	IPR038538
Gene3D	G3DSA:1.25.70.10	Transcription termination factor 3, mitochondrial	511	718	1.9E-43	IPR038538
SMART	SM00733	mt_12	654	688	0.031	IPR003690
SMART	SM00733	mt_12	167	198	720.0	IPR003690
SMART	SM00733	mt_12	237	267	1300.0	IPR003690
SMART	SM00733	mt_12	553	583	3000.0	IPR003690
SMART	SM00733	mt_12	881	912	180.0	IPR003690
SMART	SM00733	mt_12	951	981	960.0	IPR003690
SMART	SM00733	mt_12	986	1017	0.0058	IPR003690
SMART	SM00733	mt_12	131	163	6.3	IPR003690
SMART	SM00733	mt_12	845	877	0.0073	IPR003690
SMART	SM00733	mt_12	1018	1052	0.041	IPR003690
SMART	SM00733	mt_12	622	653	1.4	IPR003690
SMART	SM00733	mt_12	203	233	1700.0	IPR003690
SMART	SM00733	mt_12	917	947	220.0	IPR003690
SMART	SM00733	mt_12	304	338	14.0	IPR003690
SMART	SM00733	mt_12	272	303	0.018	IPR003690
SMART	SM00733	mt_12	517	548	760.0	IPR003690
SMART	SM00733	mt_12	95	126	0.0018	IPR003690
SMART	SM00733	mt_12	445	476	0.0014	IPR003690
SMART	SM00733	mt_12	587	617	790.0	IPR003690
SMART	SM00733	mt_12	809	840	1.9E-4	IPR003690
SMART	SM00733	mt_12	481	513	0.55	IPR003690

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003690 (double-stranded DNA binding)

KEGG Pathway

KO Term:

K15032 (NOT_FOUND)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G07900.1	Mitochondrial transcription termination factor family protein.
RefSeq	XP_044486335.1	uncharacterized protein LOC123211602 [Mangifera indica]
TrEMBL	F6HZM9	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Vitis vinifera OX=29760 GN=VIT_07s0005g03860 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg16089, jg35219, jg37099
Aizoaceae	Mesembryanthemum crystallinum	5	gene_18216, gene_18217, gene_18218, gene_18220, gene_26063
Amaranthaceae	Atriplex hortensis	1	Ah006793
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg15088, Sbi_jg16094, Sbi_jg16099, Sbi_jg55901
Amaranthaceae	Salicornia europaea	2	Seu_jg24731, Seu_jg26398
Amaranthaceae	Suaeda glauca	1	Sgl01344
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000010623, gene:ENSEOMG00000030149 ... gene:ENSEOMG00000043021
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.4BG0013340
Anacardiaceae	Pistacia vera	50	pistato.v30009700, pistato.v30009710, pistato.v30009720 ... pistato.v30032300, pistato.v30032310, pistato.v30083600, pistato.v30083610, pistato.v30083650, pistato.v30083670, pistato.v30083690, pistato.v30083730, pistato.v30103960, pistato.v30113780, pistato.v30113790, pistato.v30121100, pistato.v30122870, pistato.v30147050, pistato.v30161110, pistato.v30184290, pistato.v30184300, pistato.v30184320, pistato.v30184330, pistato.v30184340, pistato.v30184360, pistato.v30210340, pistato.v30210350, pistato.v30210550, pistato.v30210580, pistato.v30211140, pistato.v30216140, pistato.v30216500, pistato.v30230070, pistato.v30230080, pistato.v30230090, pistato.v30231670, pistato.v30234810, pistato.v30234830, pistato.v30234840, pistato.v30234850, pistato.v30234860, pistato.v30234870, pistato.v30234900, pistato.v30234930, pistato.v30234940, pistato.v30234950, pistato.v30235660, pistato.v30271580, pistato.v30281610, pistato.v30296900, pistato.v30296920
Apiaceae	Apium graveolens	16	Ag11G03946, Ag11G04479, Ag2G01503, Ag6G01226, Ag6G01228 ... Ag7G00969, Ag7G01031, Ag7G01032, Ag7G01039, Ag7G01041, Ag7G01042, Ag8G01282, Ag8G01694, Ag9G02223, Ag9G02606, Ag9G02607
Arecaceae	Cocos nucifera	6	COCNU_01G016330, COCNU_04G006880, COCNU_16G000550 ... scaffold005350G000010, scaffold007260G000010, scaffold032340G000010
Arecaceae	Phoenix dactylifera	10	gene-LOC103696633, gene-LOC103706331, gene-LOC103723012 ... gene-LOC103723013, gene-LOC120104116, gene-LOC120107792, gene-LOC120107794, gene-LOC120107906, gene-LOC120109149, gene-LOC120109445
Asparagaceae	Asparagus officinalis	5	AsparagusV1_08.3555.V1.1, AsparagusV1_Unassigned.29.V1.1 ... AsparagusV1_Unassigned.31.V1.1, AsparagusV1_Unassigned.594.V1.1, AsparagusV1_Unassigned.766.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G15820, Ftri3G10716
Brassicaceae	Arabidopsis thaliana	2	AT1G21150.1, AT5G07900.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10001776m.g.v1.0, Thhalv10006396m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g18800.v2.2, Sp4g29770.v2.2, Sp5g00610.v2.2
Brassicaceae	Brassica nigra	2	BniB06g061380.2N, BniB08g030890.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq04G1687, Ceq06G0222, Ceq06G1595, Ceq09G1186
Casuarinaceae	Casuarina glauca	4	Cgl04G1869, Cgl04G1870, Cgl06G0238, Cgl09G1275
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno02g00640, gene.Cymno05g13740, gene.Cymno05g13750 ... gene.Cymno05g13760, gene.Cymno05g19810
Hydrocharitaceae	Thalassia testudinum	23	gene.Thate01g05490, gene.Thate01g05510, gene.Thate01g08890 ... gene.Thate01g08900, gene.Thate01g08910, gene.Thate01g08920, gene.Thate01g08930, gene.Thate01g08940, gene.Thate01g08950, gene.Thate01g08960, gene.Thate01g08990, gene.Thate01g09000, gene.Thate01g09060, gene.Thate01g09070, gene.Thate01g09100, gene.Thate01g13630, gene.Thate02g07010, gene.Thate03g23010, gene.Thate04g26970, gene.Thate08g11680, gene.Thate09g01940, gene.Thate09g04960, gene.Thate09g04970
Nitrariaceae	Nitraria sibirica	13	evm.TU.LG04.290, evm.TU.LG04.291, evm.TU.LG04.292 ... evm.TU.LG04.293, evm.TU.LG04.295, evm.TU.LG04.296, evm.TU.LG05.1332, evm.TU.LG05.166, evm.TU.LG05.167, evm.TU.LG10.1053, evm.TU.LG11.1334, evm.TU.LG11.1335, evm.TU.LG11.1336
Plantaginaceae	Plantago ovata	8	Pov_00008247, Pov_00015762, Pov_00022505, Pov_00036913 ... Pov_00037652, Pov_00039307, Pov_00039313, Pov_00039314
Plumbaginaceae	Limonium bicolor	1	Lb5G26892
Poaceae	Echinochloa crus-galli	10	AH05.2451, AH05.2532, AH08.1439, BH05.2542, BH05.2607 ... BH08.1323, CH05.2704, CH05.2717, CH05.2719, CH08.1428
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_5AG0373200, gene-QOZ80_5AG0373630 ... gene-QOZ80_5AG0373740, gene-QOZ80_5AG0373750, gene-QOZ80_5BG0420480, gene-QOZ80_5BG0422510, gene-QOZ80_5BG0422520, gene-QOZ80_5BG0422630, gene-QOZ80_8AG0628180, gene-QOZ80_8BG0656710
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0063280.1.CDS1 ... HORVU.MOREX.r3.1HG0066310.1.CDS1, HORVU.MOREX.r3.1HG0068870.1.CDS1
Poaceae	Lolium multiflorum	15	gene-QYE76_013221, gene-QYE76_013241, gene-QYE76_013301 ... gene-QYE76_013333, gene-QYE76_013350, gene-QYE76_013351, gene-QYE76_013421, gene-QYE76_013423, gene-QYE76_013424, gene-QYE76_013427, gene-QYE76_013590, gene-QYE76_064678, gene-QYE76_064683, gene-QYE76_064691, gene-QYE76_066292
Poaceae	Oryza coarctata	7	Oco09G009190, Oco09G009200, Oco09G009610, Oco10G009330 ... Oco10G009340, Oco10G009750, Oco13G005570
Poaceae	Oryza sativa	4	LOC_Os05g33440.1, LOC_Os05g33460.2, LOC_Os05g34160.1 ... LOC_Os07g24090.1
Poaceae	Paspalum vaginatum	6	gene-BS78_07G117300, gene-BS78_09G139100 ... gene-BS78_09G139300, gene-BS78_09G144200, gene-BS78_10G201900, gene-BS78_10G202000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0204293, Pt_Chr0505184
Poaceae	Sporobolus alterniflorus	12	Chr01G020810, Chr12G000600, Chr12G017200, Chr16G013360 ... Chr17G012730, Chr18G008830, Chr18G008910, Chr18G009360, Chr20G007500, Chr22G008330, Chr22G008740, Chr29G006950
Poaceae	Thinopyrum elongatum	2	Tel1E01G427400, Tel1E01G506300
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG037700, gene_TRIDC1AG038650 ... gene_TRIDC1AG046730, gene_TRIDC1BG042970, gene_TRIDC1BG042980, gene_TRIDC1BG043940, gene_TRIDC1BG052880
Poaceae	Triticum aestivum	11	TraesCS1A02G251800.1.cds1, TraesCS1A02G258700.1.cds1 ... TraesCS1A02G313400.3.cds1, TraesCS1B02G263200.1.cds1, TraesCS1B02G263300.1.cds1, TraesCS1B02G269200.1.cds1, TraesCS1B02G325200.1.cds1, TraesCS1D02G251800.1.cds1, TraesCS1D02G258000.1.cds1, TraesCS1D02G313900.1.cds1, TraesCS6D02G018900.1.cds1
Poaceae	Zea mays	3	Zm00001eb178450_P001, Zm00001eb287710_P002 ... Zm00001eb349860_P001
Poaceae	Zoysia japonica	7	nbis-gene-14476, nbis-gene-14485, nbis-gene-23817 ... nbis-gene-23820, nbis-gene-23821, nbis-gene-23873, nbis-gene-49657
Poaceae	Zoysia macrostachya	5	Zma_g22908, Zma_g26832, Zma_g26837, Zma_g26838, Zma_g28221
Posidoniaceae	Posidonia oceanica	9	gene.Posoc01g29080, gene.Posoc01g29090, gene.Posoc01g40570 ... gene.Posoc02g18120, gene.Posoc02g33440, gene.Posoc04g15150, gene.Posoc05g01690, gene.Posoc07g00680, gene.Posoc09g00680
Rhizophoraceae	Bruguiera sexangula	22	evm.TU.48784.2, evm.TU.48784.3, evm.TU.48785.2 ... evm.TU.48785.3, evm.TU.60456.1, evm.TU.60456.2, evm.TU.Scaffold_11_RagTag.1546, evm.TU.Scaffold_11_RagTag.605, evm.TU.Scaffold_11_RagTag.78, evm.TU.Scaffold_15_RagTag.548, evm.TU.Scaffold_15_RagTag.549, evm.TU.Scaffold_15_RagTag.550, evm.TU.Scaffold_17_RagTag.444, evm.TU.Scaffold_18_RagTag.77, evm.TU.Scaffold_18_RagTag.79, evm.TU.Scaffold_18_RagTag.80, evm.TU.Scaffold_1_RagTag.966, evm.TU.Scaffold_3_RagTag.1327, evm.TU.Scaffold_6_RagTag.688, evm.TU.Scaffold_6_RagTag.935, evm.TU.Scaffold_6_RagTag.936, evm.TU.Scaffold_8_RagTag.1438
Rhizophoraceae	Carallia pectinifolia	17	nbisL1-mrna-12310, nbisL1-mrna-15738, nbisL1-mrna-1644 ... nbisL1-mrna-19444, nbisL1-mrna-22844, nbisL1-mrna-22871, nbisL1-mrna-25228, nbisL1-mrna-25229, nbisL1-mrna-25230, nbisL1-mrna-25232, nbisL1-mrna-26723, nbisL1-mrna-26724, nbisL1-mrna-26725, nbisL1-mrna-28413, nbisL1-mrna-28483, nbisL1-mrna-7180, nbisL1-mrna-7181
Rhizophoraceae	Ceriops tagal	12	nbisL1-mrna-14956, nbisL1-mrna-16484, nbisL1-mrna-18996 ... nbisL1-mrna-19022, nbisL1-mrna-20129, nbisL1-mrna-20144, nbisL1-mrna-20202, nbisL1-mrna-264, nbisL1-mrna-3195, nbisL1-mrna-3677, nbisL1-mrna-3678, nbisL1-mrna-4127
Rhizophoraceae	Ceriops zippeliana	14	nbisL1-mrna-12695, nbisL1-mrna-14064, nbisL1-mrna-14490 ... nbisL1-mrna-14963, nbisL1-mrna-15813, nbisL1-mrna-15814, nbisL1-mrna-2581, nbisL1-mrna-4989, nbisL1-mrna-4990, nbisL1-mrna-4991, nbisL1-mrna-4992, nbisL1-mrna-4993, nbisL1-mrna-4994, nbisL1-mrna-577
Rhizophoraceae	Kandelia candel	17	add.evm.TU.utg000001l.163, add.evm.TU.utg000001l.164 ... add.evm.TU.utg000001l.165, add.evm.TU.utg000001l.166, add.evm.TU.utg000005l.138, add.evm.TU.utg000005l.32, add.evm.TU.utg000005l.33, add.evm.TU.utg000008l.490, add.evm.TU.utg000008l.491, add.evm.TU.utg000008l.492, add.evm.TU.utg000008l.493, add.evm.TU.utg000010l.72, add.evm.TU.utg000011l.167, add.evm.TU.utg000013l.101, add.evm.TU.utg000018l.71, add.evm.TU.utg000019l.186, add.evm.TU.utg000023l.151
Rhizophoraceae	Kandelia obovata	10	Maker00000808, Maker00002204, Maker00002406, Maker00002721 ... Maker00003468, Maker00006578, Maker00007795, Maker00008477, Maker00010116, Maker00018756
Rhizophoraceae	Rhizophora apiculata	12	nbisL1-mrna-12213, nbisL1-mrna-16879, nbisL1-mrna-17466 ... nbisL1-mrna-17467, nbisL1-mrna-17468, nbisL1-mrna-19604, nbisL1-mrna-20521, nbisL1-mrna-21242, nbisL1-mrna-21243, nbisL1-mrna-22824, nbisL1-mrna-22885, nbisL1-mrna-22941
Rhizophoraceae	Rhizophora mangle	11	nbisL1-mrna-14916, nbisL1-mrna-18807, nbisL1-mrna-21478 ... nbisL1-mrna-22053, nbisL1-mrna-22274, nbisL1-mrna-22275, nbisL1-mrna-22276, nbisL1-mrna-23519, nbisL1-mrna-23520, nbisL1-mrna-3426, nbisL1-mrna-4329
Salicaceae	Populus euphratica	25	populus_peu04177, populus_peu04178, populus_peu04179 ... populus_peu04180, populus_peu04181, populus_peu04183, populus_peu04184, populus_peu04185, populus_peu04221, populus_peu04232, populus_peu05272, populus_peu08098, populus_peu08274, populus_peu10346, populus_peu10348, populus_peu18484, populus_peu22135, populus_peu27219, populus_peu28257, populus_peu28258, populus_peu29709, populus_peu29710, populus_peu35005, populus_peu35006, populus_peu35007
Solanaceae	Lycium barbarum	4	gene-LOC132621078, gene-LOC132621080, gene-LOC132621466 ... gene-LOC132622077
Solanaceae	Solanum chilense	1	SOLCI004870400
Solanaceae	Solanum pennellii	1	gene-LOC107011570
Tamaricaceae	Reaumuria soongarica	9	STRG.15702_chr06_-, STRG.18816_chr07_-, STRG.18902_chr07_+ ... STRG.18911_chr07_+, STRG.8428_chr06_-, gene_10038, gene_10040, gene_10042, gene_16961
Tamaricaceae	Tamarix chinensis	4	TC05G0436, TC06G0692, TC08G1812, TC09G0928
Zosteraceae	Zostera marina	7	Zosma01g39380.v3.1, Zosma02g17980.v3.1, Zosma02g18040.v3.1 ... Zosma02g23940.v3.1, Zosma02g23950.v3.1, Zosma02g24170.v3.1, Zosma02g24180.v3.1