Basic Information
Locus ID:
evm.TU.LG11.1297
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 38341669 | 38350185 | + | evm.TU.LG11.1297 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 80,972.37 Da | 46.75 | 89.38 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 96 | 251 | 2.204E-21 | - |
| Pfam | PF04043 | Plant invertase/pectin methylesterase inhibitor | 568 | 692 | 1.1E-9 | IPR006501 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 71 | 392 | 1.1E-55 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 130 | 179 | 1.0E-5 | IPR002934 |
| SUPERFAMILY | SSF101148 | Plant invertase/pectin methylesterase inhibitor | 566 | 706 | 4.45E-19 | IPR035513 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 59 | 248 | 1.39E-37 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 395 | 506 | 4.9E-16 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 252 | 392 | 4.45E-43 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 89 | 245 | 8.1E-101 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 395 | 566 | 3.6E-10 | - |
| Gene3D | G3DSA:1.20.140.40 | Invertase/pectin methylesterase inhibitor family protein | 567 | 710 | 9.6E-23 | IPR035513 |
| Gene3D | G3DSA:1.10.1410.10 | - | 71 | 390 | 8.1E-101 | - |
| SMART | SM00856 | PMEI_2 | 563 | 706 | 1.4E-5 | IPR006501 |
| TIGRFAM | TIGR01614 | PME_inhib: pectinesterase inhibitor domain | 565 | 710 | 3.7E-19 | IPR006501 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 541 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06560.1 | poly(A) polymerase 3. Encodes a poly(A) polymerase. Located in the cytoplasm. | 0 |
| RefSeq | XP_010671779.2 | nuclear poly(A) polymerase 3 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q56XM9 | Nuclear poly(A) polymerase 3 OS=Arabidopsis thaliana OX=3702 GN=PAPS3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7BTP8 | polynucleotide adenylyltransferase OS=Davidia involucrata OX=16924 GN=Din_041650 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology