Basic Information
Locus ID:
evm.TU.LG11.1274
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 38150263 | 38157703 | - | evm.TU.LG11.1274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 66,506.60 Da | 50.25 | 63.46 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 138 | 188 | 1.19405E-14 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 207 | 269 | 5.7E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 286 | 334 | 8.8E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 288 | 336 | 9.96E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 133 | 219 | 5.65E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 207 | 276 | 3.09E-13 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 555 | 583 | 2.59E-6 | IPR036443 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 218 | 2.6E-18 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 265 | 520 | 7.2E-85 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 554 | 585 | 7.0E-7 | - |
| SMART | SM00647 | ibrneu5 | 207 | 269 | 1.7E-22 | IPR002867 |
| SMART | SM00547 | zf_4 | 558 | 582 | 0.0022 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 273 | 343 | 0.036 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 134 | 347 | 51.129478 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 552 | 585 | 8.535414 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 560 | 579 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 556 | - | - |
| Coils | Coil | Coil | 348 | 375 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010671821.1 | probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A7G8 | RBR-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology