Basic Information
Locus ID:
evm.TU.LG11.1250
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 24796515 | 24803991 | - | evm.TU.LG11.1250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 125,418.07 Da | 43.44 | 80.18 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 443 | 482 | 4.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 343 | 373 | 0.057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 910 | 943 | 0.0021 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 334 | 948 | 4.63E-43 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 484 | 796 | 7.32E-19 | IPR036322 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 911 | 1113 | 3.79E-15 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 328 | 385 | 8.7E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 966 | 1101 | 2.5E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 399 | 694 | 1.4E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 748 | 965 | 3.5E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 904 | 943 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 528 | 571 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1055 | 1090 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 439 | 482 | 5.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 574 | 614 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 484 | 525 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 817 | 858 | 99.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 9.5E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 993 | 1035 | 2.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 5.9E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 335 | 374 | 2.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 861 | 901 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 435 | 20.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.099236 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 592 | 623 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 341 | 383 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 911 | 946 | 10.495596 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.567533 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 911 | 952 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 448 | 491 | 9.806668 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 930 | 944 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 469 | 483 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1109 | 1131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1131 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_044498698.1 | topless-related protein 2-like isoform X2 [Mangifera indica] | 0 |
| Q9LRZ0 | Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067G086 | Topless-related protein 3-like OS=Citrus sinensis OX=2711 GN=CISIN_1g001178mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology