Basic Information
Locus ID:
evm.TU.LG11.1229
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 24601984 | 24607908 | + | evm.TU.LG11.1229 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 57,475.26 Da | 50.11 | 78.81 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 336 | 512 | 1.5263E-114 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 4 | 96 | 2.3E-11 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 334 | 441 | 8.5E-16 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 337 | 467 | 3.14E-19 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 325 | 512 | 2.7E-70 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 3 | 116 | 2.0E-31 | - |
| SMART | SM00232 | pad1_6 | 337 | 465 | 4.2E-12 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 338 | 468 | 28.441992 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 252 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16144.1 | associated molecule with the SH3 domain of STAM 3. Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro. Required for intracellular trafficking and vacuole biogenesis. | 0 |
| RefSeq | XP_031264521.1 | AMSH-like ubiquitin thioesterase 3 [Pistacia vera] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5C7IT97 | MPN domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000211 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology