Basic Information
Locus ID:
evm.TU.LG11.1203
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 24369945 | 24373298 | + | evm.TU.LG11.1203 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.46 | 52,206.01 Da | 54.07 | 63.67 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 324 | 405 | 1.0E-18 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 422 | 453 | 6.2E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 324 | 406 | 7.3E-28 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 56 | - | - |
| Coils | Coil | Coil | 313 | 350 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_006419395.1 | uncharacterized protein LOC18031760 [Citrus clementina] | 0 |
| TrEMBL | V4S6Z0 | PAPA-1 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10004963mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology