Basic Information
Locus ID:
evm.TU.LG11.1133
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 23637299 | 23681121 | + | evm.TU.LG11.1133 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 461,285.22 Da | 45.07 | 89.44 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2647 | 2760 | 7.68948E-6 | - |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 383 | 1.7E-67 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2011 | 2168 | 6.3E-11 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3149 | 3460 | 4.8E-13 | IPR009543 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 1.7E-31 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2252 | 2393 | 2.0E-11 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 578 | 805 | 2.9E-36 | IPR031642 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2627 | 2752 | 2.81E-6 | IPR035892 |
| SUPERFAMILY | SSF50729 | PH domain-like | 848 | 947 | 1.12E-5 | - |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2631 | 2770 | 1.3E-5 | IPR035892 |
| SMART | SM00239 | C2_3c | 2644 | 2770 | 8.0E-4 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2622 | 2771 | 9.171793 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2212 | 2232 | - | - |
| Coils | Coil | Coil | 97 | 127 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_024958370.1 | uncharacterized protein LOC102625672 isoform X2 [Citrus sinensis] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5N737 | C2 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_017240 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology