Basic Information
Locus ID:
evm.TU.LG11.1127
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 23536772 | 23543995 | + | evm.TU.LG11.1127 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.11 | 126,787.46 Da | 61.23 | 56.53 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 726 | 855 | 6.5632E-61 | - |
| CDD | cd00201 | WW | 49 | 78 | 3.70326E-4 | IPR001202 |
| Pfam | PF00397 | WW domain | 48 | 78 | 4.6E-7 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 738 | 846 | 3.7E-31 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 531 | 701 | 4.6E-48 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 40 | 79 | 5.99E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 578 | 862 | 3.08E-74 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 43 | 83 | 2.0E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 717 | 888 | 6.2E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 482 | 716 | 3.6E-88 | IPR027417 |
| SMART | SM00456 | ww_5 | 47 | 80 | 8.3E-7 | IPR001202 |
| SMART | SM00490 | helicmild6 | 762 | 846 | 1.3E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 526 | 729 | 2.6E-64 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 46 | 80 | 11.4081 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 507 | 535 | 11.096692 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 538 | 712 | 30.861397 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 741 | 885 | 24.899395 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 658 | 666 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 52 | 78 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1059 | 1073 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 939 | 1110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1032 | 1051 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1081 | 1106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 897 | 921 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 987 | 1022 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_031256334.1 | LOW QUALITY PROTEIN: ATP-dependent RNA helicase-like protein DB10 [Pistacia vera] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | V4RF72 | DEAD-box ATP-dependent RNA helicase 46 OS=Citrus clementina OX=85681 GN=CICLE_v10004187mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology