Basic Information
Locus ID:
evm.TU.LG11.1115
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 23410962 | 23415275 | - | evm.TU.LG11.1115 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 41,872.89 Da | 60.27 | 65.69 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 318 | 358 | 5.29609E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 317 | 363 | 4.8E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 318 | 364 | 1.86E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 368 | 6.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 319 | 357 | 0.0011 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 358 | 11.486073 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 53 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006489300.1 | probable E3 ubiquitin-protein ligase LUL4 [Citrus sinensis] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2H5QBJ1 | RING-type E3 ubiquitin transferase OS=Citrus unshiu OX=55188 GN=CUMW_214380 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology