halophFGD

Basic Information

Locus ID: evm.TU.LG10.950

Species & Taxonomic ID: Nitraria sibirica & 357931

Genome Assembly:

Description: RING FYVE PHD zinc finger superfamily protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG10	21347602	21352641	-	evm.TU.LG10.950

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.06	33,499.69 Da	60.22	85.59	-0.17

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16495	RING_CH-C4HC3_MARCH	87	133	1.28041E-17	-
Pfam	PF12428	Protein of unknown function (DUF3675)	138	256	8.2E-46	IPR022143
Pfam	PF12906	RING-variant domain	87	132	3.4E-12	IPR011016
SUPERFAMILY	SSF57850	RING/U-box	85	137	4.59E-14	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	68	141	9.3E-19	IPR013083
SMART	SM00744	ringv_2	86	133	2.9E-18	IPR011016
ProSiteProfiles	PS51292	Zinc finger RING-CH-type profile.	79	139	21.386099	IPR011016
MobiDBLite	mobidb-lite	consensus disorder prediction	35	60	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	35	56	-	-

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G47550.3	RING/FYVE/PHD zinc finger superfamily protein.
RefSeq	XP_044486890.1	uncharacterized protein LOC123211964 isoform X1 [Mangifera indica]
TrEMBL	A0A314XLF8	RING-CH-type domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31164 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	11	jg30811, jg35121, jg35122, jg39838, jg5202, jg5412, jg5963 ... jg7112, jg7303, jg8960, jg9340
Aizoaceae	Mesembryanthemum crystallinum	6	gene_13461, gene_13790, gene_18248, gene_18570, gene_2849 ... gene_3782
Amaranthaceae	Atriplex hortensis	7	Ah000122, Ah000859, Ah014124, Ah019567, Ah023819, Ah025378 ... Ah035547
Amaranthaceae	Beta vulgaris	6	BVRB_2g027450, BVRB_3g058470, BVRB_3g062170, BVRB_5g114740 ... BVRB_6g142750, BVRB_6g153900
Amaranthaceae	Salicornia bigelovii	12	Sbi_jg12907, Sbi_jg21948, Sbi_jg29594, Sbi_jg31124 ... Sbi_jg31352, Sbi_jg38523, Sbi_jg42509, Sbi_jg45141, Sbi_jg52962, Sbi_jg57933, Sbi_jg58152, Sbi_jg6629
Amaranthaceae	Salicornia europaea	7	Seu_jg15302, Seu_jg15799, Seu_jg25565, Seu_jg25764 ... Seu_jg27029, Seu_jg27031, Seu_jg8898
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00002762, GOSA_00004453, GOSA_00004631, GOSA_00006403 ... GOSA_00008440, GOSA_00015938
Amaranthaceae	Suaeda glauca	12	Sgl01835, Sgl06991, Sgl32771, Sgl35596, Sgl35679, Sgl38056 ... Sgl40932, Sgl43132, Sgl54497, Sgl59830, Sgl62196, Sgl66758
Amaranthaceae	Chenopodium album	17	gene:ENSEOMG00000000305, gene:ENSEOMG00000002816 ... gene:ENSEOMG00000003530, gene:ENSEOMG00000004450, gene:ENSEOMG00000006751, gene:ENSEOMG00000013715, gene:ENSEOMG00000014052, gene:ENSEOMG00000021150, gene:ENSEOMG00000021696, gene:ENSEOMG00000022424, gene:ENSEOMG00000024023, gene:ENSEOMG00000024719, gene:ENSEOMG00000026102, gene:ENSEOMG00000026461, gene:ENSEOMG00000030573, gene:ENSEOMG00000044032, gene:ENSEOMG00000049756
Amaranthaceae	Chenopodium quinoa	11	CQ.Regalona.r1.2AG0018710, CQ.Regalona.r1.2BG0020390 ... CQ.Regalona.r1.3AG0010750, CQ.Regalona.r1.5AG0020660, CQ.Regalona.r1.5AG0026860, CQ.Regalona.r1.5BG0022040, CQ.Regalona.r1.5BG0028440, CQ.Regalona.r1.6AG0001090, CQ.Regalona.r1.6AG0012980, CQ.Regalona.r1.6BG0001100, CQ.Regalona.r1.6BG0013060
Anacardiaceae	Pistacia vera	5	pistato.v30008270, pistato.v30027350, pistato.v30190950 ... pistato.v30216310, pistato.v30246980
Apiaceae	Apium graveolens	10	Ag10G00092, Ag11G03982, Ag1G01400, Ag1G01612, Ag4G00359 ... Ag5G00440, Ag5G01973, Ag8G01269, Ag8G01833, Ag9G02335
Arecaceae	Cocos nucifera	7	COCNU_01G022250, COCNU_02G005630, COCNU_03G009440 ... COCNU_04G010960, COCNU_06G008070, COCNU_13G002440, scaffold006534G000010
Arecaceae	Phoenix dactylifera	12	gene-LOC103700406, gene-LOC103700961, gene-LOC103703101 ... gene-LOC103705604, gene-LOC103706026, gene-LOC103707761, gene-LOC103715377, gene-LOC103716403, gene-LOC103718803, gene-LOC103719010, gene-LOC103722871, gene-LOC120109781
Asparagaceae	Asparagus officinalis	11	AsparagusV1_01.206.V1.1, AsparagusV1_01.2912.V1.1 ... AsparagusV1_03.62.V1.1, AsparagusV1_04.1983.V1.1, AsparagusV1_05.150.V1.1, AsparagusV1_06.682.V1.1, AsparagusV1_07.1231.V1.1, AsparagusV1_07.3530.V1.1, AsparagusV1_08.2431.V1.1, AsparagusV1_09.574.V1.1, AsparagusV1_10.1385.V1.1
Asteraceae	Flaveria trinervia	14	Ftri10G10722, Ftri11G31442, Ftri12G24667, Ftri13G08743 ... Ftri15G19110, Ftri16G33443, Ftri17G20733, Ftri18G01494, Ftri18G23703, Ftri1G03846, Ftri1G28885, Ftri2G03840, Ftri5G26335, Ftri9G21786
Brassicaceae	Arabidopsis thaliana	8	AT1G02610.1, AT1G14260.1, AT2G01275.1, AT2G02960.5 ... AT3G47550.3, AT4G02075.1, AT5G38070.1, AT5G62460.1
Brassicaceae	Eutrema salsugineum	9	Thhalv10001001m.g.v1.0, Thhalv10004664m.g.v1.0 ... Thhalv10004698m.g.v1.0, Thhalv10008459m.g.v1.0, Thhalv10008710m.g.v1.0, Thhalv10010967m.g.v1.0, Thhalv10027893m.g.v1.0, Thhalv10028096m.g.v1.0, Thhalv10029217m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp1g01610.v2.2, Sp1g12610.v2.2, Sp2g12740.v2.2 ... Sp2g14000.v2.2, Sp2g25640.v2.2, Sp5g14330.v2.2, Sp6g01960.v2.2, Sp7g04010.v2.2
Brassicaceae	Brassica nigra	13	BniB02g009360.2N, BniB02g064640.2N, BniB02g065660.2N ... BniB03g000160.2N, BniB03g038070.2N, BniB04g002260.2N, BniB04g009800.2N, BniB06g010730.2N, BniB06g024350.2N, BniB06g039260.2N, BniB06g060570.2N, BniB08g044550.2N, BniB08g060360.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq03G2852, Ceq04G1769, Ceq06G1036, Ceq07G0111, Ceq08G0679 ... Ceq09G0931
Casuarinaceae	Casuarina glauca	5	Cgl04G1946, Cgl06G1078, Cgl07G0102, Cgl08G0658, Cgl09G1010
Cymodoceaceae	Cymodocea nodosa	10	gene.Cymno02g03240, gene.Cymno03g02400, gene.Cymno03g11570 ... gene.Cymno04g10170, gene.Cymno05g11190, gene.Cymno05g15000, gene.Cymno07g11140, gene.Cymno08g01960, gene.Cymno09g08410, gene.Cymno11g02200
Dunaliellaceae	Dunaliella salina	6	Dusal.0085s00024.v1.0, Dusal.0148s00002.v1.0 ... Dusal.0258s00006.v1.0, Dusal.0258s00007.v1.0, Dusal.0284s00014.v1.0, Dusal.1769s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	8	gene.Thate01g03730, gene.Thate01g10030, gene.Thate01g11780 ... gene.Thate03g00210, gene.Thate03g21730, gene.Thate06g04750, gene.Thate06g08200, gene.Thate06g12310
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-11171, nbisL1-mrna-11559, nbisL1-mrna-6229 ... nbisL1-mrna-6529, nbisL1-mrna-9600
Nitrariaceae	Nitraria sibirica	7	evm.TU.LG02.186, evm.TU.LG02.518, evm.TU.LG03.1450 ... evm.TU.LG03.250, evm.TU.LG04.438, evm.TU.LG10.950, evm.TU.LG11.341
Plantaginaceae	Plantago ovata	5	Pov_00016442, Pov_00021427, Pov_00021683, Pov_00027152 ... Pov_00029685
Plumbaginaceae	Limonium bicolor	10	Lb1G00257, Lb1G01089, Lb1G01622, Lb1G01626, Lb2G10153 ... Lb2G13248, Lb2G13316, Lb4G23483, Lb6G29700, Lb6G29816
Poaceae	Echinochloa crus-galli	26	AH02.1211, AH02.1413, AH02.2796, AH02.4159, AH03.1896 ... AH04.1840, AH05.1475, AH05.2842, AH07.2329, BH02.1483, BH02.2875, BH02.4177, BH03.2028, BH04.1889, BH05.1644, BH05.2907, BH06.2078, CH02.1006, CH02.1600, CH02.3661, CH02.4209, CH03.2244, CH04.2117, CH05.1853, CH05.2939, CH07.2213
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_1AG0007650, gene-QOZ80_1AG0029010 ... gene-QOZ80_1AG0042840, gene-QOZ80_1BG0056420, gene-QOZ80_1BG0063000, gene-QOZ80_1BG0079230, gene-QOZ80_2AG0135060, gene-QOZ80_2BG0190680, gene-QOZ80_5BG0412170, gene-QOZ80_6AG0535000, gene-QOZ80_6BG0488210, gene-QOZ80_9AG0687950, gene-QOZ80_9BG0715930
Poaceae	Hordeum vulgare	10	HORVU.MOREX.r3.1HG0055430.1, HORVU.MOREX.r3.1HG0061660.1 ... HORVU.MOREX.r3.1HG0084350.1, HORVU.MOREX.r3.3HG0224410.1, HORVU.MOREX.r3.3HG0280980.1, HORVU.MOREX.r3.3HG0306150.1, HORVU.MOREX.r3.4HG0358510.1, HORVU.MOREX.r3.4HG0360670.1, HORVU.MOREX.r3.5HG0484600.2, HORVU.MOREX.r3.6HG0563900.1
Poaceae	Lolium multiflorum	10	gene-QYE76_005053, gene-QYE76_012887, gene-QYE76_015644 ... gene-QYE76_023182, gene-QYE76_042139, gene-QYE76_049283, gene-QYE76_054630, gene-QYE76_057060, gene-QYE76_057079, gene-QYE76_066128
Poaceae	Oryza coarctata	17	Oco01G000840, Oco01G008900, Oco01G017570, Oco01G027130 ... Oco02G000910, Oco02G028210, Oco03G013460, Oco04G012900, Oco09G007300, Oco09G016170, Oco10G007530, Oco10G015960, Oco15G009170, Oco16G008600, Oco18G004770, Oco21G008150, Oco22G009320
Poaceae	Oryza sativa	10	LOC_Os01g03100.1, LOC_Os01g19800.1, LOC_Os01g49280.1 ... LOC_Os01g66970.1, LOC_Os02g36740.1, LOC_Os05g28730.1, LOC_Os05g47900.1, LOC_Os08g33860.1, LOC_Os09g24650.2, LOC_Os11g38800.1
Poaceae	Paspalum vaginatum	9	gene-BS78_02G181400, gene-BS78_03G083700, gene-BS78_K122800 ... gene-BS78_03G132800, gene-BS78_03G234900, gene-BS78_03G365600, gene-BS78_05G195500, gene-BS78_09G105400, gene-BS78_09G227700
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0103235, Pt_Chr0204274, Pt_Chr0205439, Pt_Chr0205482 ... Pt_Chr0303844, Pt_Chr0503542, Pt_Chr0503640, Pt_Chr0503795, Pt_Chr0600196, Pt_Chr0602390, Pt_Chr0602405
Poaceae	Sporobolus alterniflorus	28	Chr02G012370, Chr02G021700, Chr02G024660, Chr03G003240 ... Chr03G007220, Chr03G021780, Chr05G002510, Chr05G012530, Chr05G021270, Chr05G030720, Chr07G014910, Chr08G001770, Chr08G007590, Chr08G020380, Chr09G013430, Chr0G023950, Chr0G031850, Chr10G010160, Chr12G015340, Chr12G021610, Chr13G009330, Chr14G013780, Chr17G004460, Chr18G014690, Chr21G012870, Chr22G001990, Chr24G006260, Chr31G007830
Poaceae	Thinopyrum elongatum	8	Tel1E01G354900, Tel1E01G379900, Tel1E01G615900 ... Tel3E01G046000, Tel3E01G441600, Tel3E01G634800, Tel4E01G271400, Tel5E01G372800
Poaceae	Triticum dicoccoides	17	gene_TRIDC1AG031100, gene_TRIDC1AG033920 ... gene_TRIDC1AG055520, gene_TRIDC1BG036540, gene_TRIDC1BG039360, gene_TRIDC1BG063880, gene_TRIDC3AG000540, gene_TRIDC3AG039420, gene_TRIDC3AG057010, gene_TRIDC3BG003280, gene_TRIDC3BG044480, gene_TRIDC3BG063900, gene_TRIDC4BG023210, gene_TRIDC5AG036390, gene_TRIDC5BG038370, gene_TRIDC5BG075040, gene_TRIDC7BG062050
Poaceae	Triticum aestivum	24	TraesCS1A02G206100.1, TraesCS1A02G225700.1 ... TraesCS1A02G378100.1, TraesCS1B02G219700.1, TraesCS1B02G238900.1, TraesCS1B02G398900.1, TraesCS1D02G209400.1, TraesCS1D02G226900.1, TraesCS1D02G385100.1, TraesCS3A02G025800.1, TraesCS3A02G264000.1, TraesCS3A02G399700.1, TraesCS3B02G019200.3, TraesCS3B02G297400.1, TraesCS3B02G432700.1, TraesCS3D02G019900.2, TraesCS3D02G264100.1, TraesCS3D02G393800.1, TraesCS4A02G164100.1, TraesCS4B02G149000.2, TraesCS4D02G147800.1, TraesCS5A02G228400.1, TraesCS5B02G227200.1, TraesCS5D02G239200.1
Poaceae	Zea mays	13	Zm00001eb099600_P004, Zm00001eb130210_P001 ... Zm00001eb144890_P001, Zm00001eb167370_P001, Zm00001eb183100_P001, Zm00001eb244960_P001, Zm00001eb286060_P003, Zm00001eb295020_P001, Zm00001eb334850_P002, Zm00001eb340290_P001, Zm00001eb347470_P001, Zm00001eb360530_P001, Zm00001eb365790_P001
Poaceae	Zoysia japonica	14	nbis-gene-11120, nbis-gene-12604, nbis-gene-13479 ... nbis-gene-13742, nbis-gene-17797, nbis-gene-20026, nbis-gene-20658, nbis-gene-26143, nbis-gene-28501, nbis-gene-32270, nbis-gene-43102, nbis-gene-46136, nbis-gene-46462, nbis-gene-46463
Poaceae	Zoysia macrostachya	14	Zma_g10900, Zma_g11706, Zma_g13753, Zma_g18158, Zma_g19032 ... Zma_g26673, Zma_g27335, Zma_g27962, Zma_g30303, Zma_g32421, Zma_g7517, Zma_g7862, Zma_g9180, Zma_g9871
Portulacaceae	Portulaca oleracea	12	evm.TU.LG01.2634, evm.TU.LG02.1243, evm.TU.LG03.1932 ... evm.TU.LG05.2230, evm.TU.LG06.840, evm.TU.LG07.1343, evm.TU.LG09.732, evm.TU.LG12.1461, evm.TU.LG13.389, evm.TU.LG14.1770, evm.TU.LG14.240, evm.TU.LG21.91
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g24260, gene.Posoc01g31090, gene.Posoc02g07410 ... gene.Posoc04g03820, gene.Posoc05g06580
Rhizophoraceae	Bruguiera sexangula	11	evm.TU.60426.7, evm.TU.60428.1, evm.TU.Scaffold_4_RagTag.582 ... evm.TU.Scaffold_11_RagTag.889, evm.TU.Scaffold_11_RagTag.890, evm.TU.Scaffold_15_RagTag.153, evm.TU.Scaffold_15_RagTag.624, evm.TU.Scaffold_17_RagTag.473, evm.TU.Scaffold_17_RagTag.840, evm.TU.Scaffold_6_RagTag.1276, evm.TU.Scaffold_9_RagTag.756
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-14567, nbisL1-mrna-16246, nbisL1-mrna-21466 ... nbisL1-mrna-2230, nbisL1-mrna-22954, nbisL1-mrna-23551, nbisL1-mrna-26803, nbisL1-mrna-2724, nbisL1-mrna-28788
Rhizophoraceae	Ceriops tagal	8	nbisL1-mrna-12008, nbisL1-mrna-20009, nbisL1-mrna-20318 ... nbisL1-mrna-432, nbisL1-mrna-4810, nbisL1-mrna-6171, nbisL1-mrna-6950, nbisL1-mrna-7159
Rhizophoraceae	Ceriops zippeliana	8	nbisL1-mrna-1099, nbisL1-mrna-12470, nbisL1-mrna-14894 ... nbisL1-mrna-15749, nbisL1-mrna-17484, nbisL1-mrna-1766, nbisL1-mrna-18535, nbisL1-mrna-22003
Rhizophoraceae	Kandelia candel	8	evm.TU.utg000001l.322, evm.TU.utg000001l.94 ... evm.TU.utg000003l.625, evm.TU.utg000008l.371, evm.TU.utg000010l.29, evm.TU.utg000011l.824, evm.TU.utg000013l.255, evm.TU.utg000013l.469
Rhizophoraceae	Kandelia obovata	8	Maker00001182, Maker00002650, Maker00004458, Maker00004651 ... Maker00006684, Maker00007382, Maker00008507, Maker00009514
Rhizophoraceae	Rhizophora apiculata	8	nbisL1-mrna-10862, nbisL1-mrna-11341, nbisL1-mrna-11629 ... nbisL1-mrna-13477, nbisL1-mrna-14533, nbisL1-mrna-1607, nbisL1-mrna-7165, nbisL1-mrna-832
Rhizophoraceae	Rhizophora mangle	8	nbisL1-mrna-14197, nbisL1-mrna-1556, nbisL1-mrna-15735 ... nbisL1-mrna-17870, nbisL1-mrna-2781, nbisL1-mrna-3978, nbisL1-mrna-5288, nbisL1-mrna-8537
Salicaceae	Populus euphratica	11	populus_peu06718, populus_peu07135, populus_peu09601 ... populus_peu16784, populus_peu18777, populus_peu18869, populus_peu20615, populus_peu21113, populus_peu24930, populus_peu27331, populus_peu31325
Solanaceae	Lycium barbarum	10	gene-LOC132600586, gene-LOC132603443, gene-LOC132609327 ... gene-LOC132615162, gene-LOC132622849, gene-LOC132626087, gene-LOC132632944, gene-LOC132641641, gene-LOC132642080, gene-LOC132644945
Solanaceae	Solanum chilense	9	SOLCI001686800, SOLCI001816000, SOLCI002164100 ... SOLCI003714500, SOLCI004091700, SOLCI005346300, SOLCI005517600, SOLCI006259600, SOLCI006525000
Solanaceae	Solanum pennellii	9	gene-LOC107007046, gene-LOC107010545, gene-LOC107012365 ... gene-LOC107014909, gene-LOC107015844, gene-LOC107018495, gene-LOC107018935, gene-LOC107023642, gene-LOC107026971
Tamaricaceae	Reaumuria soongarica	7	STRG.14848_chr08_-, STRG.17435_chr09_+, STRG.29340_chr10_- ... gene_10780, gene_11481, gene_2936, gene_9840
Tamaricaceae	Tamarix chinensis	7	TC03G0583, TC05G1149, TC07G1802, TC07G2738, TC08G0725 ... TC11G0988, TC12G1875
Zosteraceae	Zostera marina	7	Zosma01g06680.v3.1, Zosma01g27740.v3.1, Zosma02g19610.v3.1 ... Zosma03g01690.v3.1, Zosma04g02090.v3.1, Zosma04g25300.v3.1, Zosma05g08860.v3.1